Browse Element(s) Details


OsAffx.12905.1.S1_at

Description tigr:9631.m01766
TID=OsAffx.12905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1797011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17910OsAffx.27508.63.S1_s_at11/113+9957977..9960077kinesin like protein, putative, expressed
LOC_Os03g17920Os.52177.1.S1_at11/113+9960342..9965612pseudouridine synthase family protein, putative, expressed
LOC_Os03g17930Os.13621.1.S1_at11/113+9966269..9969439Alpha-taxilin, putative, expressed
LOC_Os03g17940Os.56999.1.S1_at11/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17940Os.25160.1.S1_at1/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17950Os.53449.1.A1_at11/113+9973968..9977959expressed protein
LOC_Os03g17960Os.53834.1.S1_at11/113+9978689..9981787expressed protein
LOC_Os03g17970OsAffx.12905.1.S1_at11/113+9982241..9982695hypothetical protein
LOC_Os03g17980Os.338.1.S2_a_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.3.S1_x_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S2_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S1_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.2.S1_x_at7/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.4.S1_s_at2/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17990Os.25001.1.S1_at11/113+9995552..9998559Yip1 domain containing protein, expressed
LOC_Os03g18000OsAffx.3265.1.S1_at10/113+10003272..10003838phosphoinositide-specific phospholipase C, putative
LOC_Os03g18010OsAffx.25128.1.S1_at10/113+10004299..10006802phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os03g18020OsAffx.12906.1.S1_at11/113+10007156..10008084rhodanese-like family protein, putative
LOC_Os03g18020Os.41415.2.S1_x_at1/113+10007156..10008084rhodanese-like family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12905.1.S1_at--700--7411Chr03:9982638..9982662 (25 bp)
GTGTTGTTGCGGTTCTTGGAGTCAA
LOC_Os03g17970
OsAffx.12905.1.S1_at--928--4671Chr03:9982630..9982654 (25 bp)
GCGGTTCTTGGAGTCAACATATGTG
LOC_Os03g17970
OsAffx.12905.1.S1_at--1114--2031Chr03:9982605..9982629 (25 bp)
ACATTCAAGGAAAGGGCGTACGAGA
LOC_Os03g17970
OsAffx.12905.1.S1_at--843--6011Chr03:9982439..9982460 (22 bp)
GAGAGAGCAGCCAACGTCATTCTAC
LOC_Os03g17970
OsAffx.12905.1.S1_at--783--1891Chr03:9982426..9982450 (25 bp)
ACGTCATTCTACTCACTATGGTGGC
LOC_Os03g17970
OsAffx.12905.1.S1_at--583--111Chr03:9982421..9982445 (25 bp)
ATTCTACTCACTATGGTGGCGAACA
LOC_Os03g17970
OsAffx.12905.1.S1_at--108--7731Chr03:9982407..9982431 (25 bp)
GGTGGCGAACAATGGAGTGCTTCAT
LOC_Os03g17970
OsAffx.12905.1.S1_at--895--831Chr03:9982396..9982420 (25 bp)
ATGGAGTGCTTCATTGTTCAACAAA
LOC_Os03g17970
OsAffx.12905.1.S1_at--691--2811Chr03:9982373..9982397 (25 bp)
AAGTAGCTCCTACCAAAGGGTGAAG
LOC_Os03g17970
OsAffx.12905.1.S1_at--477--3251Chr03:9982360..9982384 (25 bp)
CAAAGGGTGAAGTGTTGTAAGGCCA
LOC_Os03g17970
OsAffx.12905.1.S1_at--956--3191Chr03:9982297..9982321 (25 bp)
CAATGCAATGGCCTGGTAGGAGAAA
LOC_Os03g17970
Target Sequence 
GTGTTGTTGCGGTTCTTGGAGTCAACATATGTGACATTCAAGGAAAGGGCGTACGAGAGAGAGCAGCCAACGTCATTCTA
CTCACTATGGTGGCGAACAATGGAGTGCTTCATTGTTCAACAAAGTAGCTCCTACCAAAGGGTGAAGTGTTGTAAGGCCA
AGGAAGTGTGGAGGGAGAACAAGGATGGTGGAGAGGTGCAATGCAATGGCCTGGTAGGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis