Browse Element(s) Details


OsAffx.12919.1.S1_at

Description tigr:9631.m01820
TID=OsAffx.12919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1847011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18430Os.32994.1.S1_at10/113+10312319..10315974protein kinase family protein, putative, expressed
LOC_Os03g18440Os.7261.1.S1_at11/113+10324018..10334636expressed protein
LOC_Os03g18454Os.22638.1.S1_x_at11/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18454Os.12546.1.S1_at9/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18470OsAffx.12919.1.S1_at11/113+10338878..10340482expressed protein
LOC_Os03g18480OsAffx.28970.2.S1_at11/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.4.S1_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.3.S1_x_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18490OsAffx.12920.1.S1_at11/113+10346030..10347121expressed protein
LOC_Os03g18500Os.24774.1.S1_at11/113+10347920..10351635Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed
LOC_Os03g18540Os.18166.1.S1_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.18166.1.S2_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.51413.1.S1_at1/113+10360389..10366633expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12919.1.S1_at--807--7511Chr03:10339436..10339460 (25 bp)
GTGGAAGCTCCATGAAGGCTACCGA
LOC_Os03g18470
OsAffx.12919.1.S1_at--1106--2731Chr03:10339201..10339225 (25 bp)
AAGAAGAGGCGCAAGATGGCCGACA
LOC_Os03g18470
OsAffx.12919.1.S1_at--577--4331Chr03:10338992..10339016 (25 bp)
CCATGTCATCGAGGACCCAGAGATT
LOC_Os03g18470
OsAffx.12919.1.S1_at--243--5811Chr03:10338979..10339003 (25 bp)
GACCCAGAGATTCTGAAGCAGAGGC
LOC_Os03g18470
OsAffx.12919.1.S1_at--535--5531Chr03:10338953..10338977 (25 bp)
GAAAAAGATGCATCCGATCCTGAGT
LOC_Os03g18470
OsAffx.12919.1.S1_at--824--1291Chr03:10338948..10338972 (25 bp)
AGATGCATCCGATCCTGAGTCTGCG
LOC_Os03g18470
OsAffx.12919.1.S1_at--599--6371Chr03:10338938..10338962 (25 bp)
GATCCTGAGTCTGCGGAGCCGAGCA
LOC_Os03g18470
OsAffx.12919.1.S1_at--26--8891Chr03:10338933..10338957 (25 bp)
TGAGTCTGCGGAGCCGAGCAAGCCA
LOC_Os03g18470
OsAffx.12919.1.S1_at--1067--9132Chr05:8819412..8819432 (21 bp)
TGCGGAGCCGAGCAAGCCACGTATC
NONE
OsAffx.12919.1.S1_at--922--4071Chr03:10338919..10338943 (25 bp)
CGAGCAAGCCACGTATCCTCTATGG
LOC_Os03g18470
OsAffx.12919.1.S1_at--1093--4391Chr03:10338912..10338936 (25 bp)
GCCACGTATCCTCTATGGCCGAGAA
LOC_Os03g18470
Target Sequence 
GTGGAAGCTCCATGAAGGCTACCGAGAAGCAGAGGAGGCGAAGAAGCGGCGCAAGATGGCCGACATGGGCGCAGCTGCAA
AGCCAAAGGAGCCAGCGCTTCCACCGAAGAAGTTGCCGGCCGTCGTTGCCAGCGCCGGCCGCCGCGAGGGCATCGAGCTC
CGCAACGACGACGAAGAGAAGATCGCCGCTGCAAAGCGGAAGCTCCATGAAGGCTACCGAGAAGCAGAGGAGGCGAAGAA
GAGGCGCAAGATGGCCGACATGGGCGCAGCTGCAAAGCCAAAGGAACCAGCGCTTCCGCCGAAGAAGTCGCCGGCCGTCG
TTGCCAGCGCCGGCCGCCGCGAGGGCATCGAGCTCCGCAACGAAGACGAGAAGATCGCCGCTGCAAAGCGGAAGCTCCGT
GAAGGCTACCAAGAAGCAGAGGAGGCGAAGAAGCGGCGCAAGATCCATGTCATCGAGGACCCAGAGATTCTGAAGCAGAG
GCAGAAAAAGATGCATCCGATCCTGAGTCTGCGGAGCCGAGCAAGCCACGTATCCTCTATGGCCGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis