Browse Element(s) Details


OsAffx.12973.1.S1_at

Description tigr:9631.m02159
TID=OsAffx.12973.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2161010/11hypothetical protein
LOC_Os03g381301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein
LOC_Os03g21650OsAffx.12975.1.S1_at11/113+12338091..12338555expressed protein
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12973.1.S1_at--463--8411Chr03:12318476..12318500 (25 bp)
GGCCCCAAGGAGAGTGTCACGCTGT
LOC_Os03g21610
OsAffx.12973.1.S1_at--41--2931Chr03:12318470..12318494 (25 bp)
AAGGAGAGTGTCACGCTGTACAGCG
LOC_Os03g21610
OsAffx.12973.1.S1_at--860--5891NONE
GAGCTGATCCGGGTCCATACAAAGA
NONE
OsAffx.12973.1.S1_at--221--9272Chr03:21128089..21128109 (21 bp)
TCCGGGTCCATACAAAGAGGCGCAA
LOC_Os03g38130
OsAffx.12973.1.S1_at--916--1311Chr03:12317342..12317366 (25 bp)
AGAGGCGCAACAAGCTACTTTATGA
LOC_Os03g21610
OsAffx.12973.1.S1_at--957--5131Chr03:12317336..12317360 (25 bp)
GCAACAAGCTACTTTATGATAGGAT
LOC_Os03g21610
OsAffx.12973.1.S1_at--526--7991Chr03:12317315..12317339 (25 bp)
GGATGAGAGATATTGTCTTTGTCAA
LOC_Os03g21610
OsAffx.12973.1.S1_at--315--7151Chr03:12317301..12317325 (25 bp)
GTCTTTGTCAAATTGAACTCCAAAT
LOC_Os03g21610
OsAffx.12973.1.S1_at--2--5971Chr03:12317264..12317288 (25 bp)
GAGACAACAAAGATAGGGATCCTTT
LOC_Os03g21610
OsAffx.12973.1.S1_at--785--8191Chr03:12317233..12317257 (25 bp)
GGAAGTCAATGATGCTGTGTCTAAT
LOC_Os03g21610
OsAffx.12973.1.S1_at--978--8851Chr03:12317224..12317248 (25 bp)
TGATGCTGTGTCTAATGATGAGAAT
LOC_Os03g21610
Target Sequence 
GGCCCCAAGGAGAGTGTCACGCTGTACAGCGACAACACCGGCGAGGAGTACGCGGACGAGGCCGAGCTGATCCGGGTCCA
TACAAAGAGGCGCAACAAGCTACTTTATGATAGGATGAGAGATATTGTCTTTGTCAAATTGAACTCCAAATTAATAAACA
AGAGAGACAACAAAGATAGGGATCCTTTAGAGAAGGAAGTCAATGATGCTGTGTCTAATGATGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis