Browse Element(s) Details


OsAffx.12998.1.S1_x_at

Description tigr:9631.m02336
TID=OsAffx.12998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2396011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23929Os.18521.1.A1_at6/113+13559464..13563099U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23940OsAffx.25201.1.S1_s_at11/113+13564078..13565271expressed protein
LOC_Os03g23950Os.5414.1.S1_at11/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23950Os.52410.1.S1_x_at5/113+13565574..13571924Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23960OsAffx.12998.1.S1_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960OsAffx.12998.1.S1_x_at11/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23960Os.16214.1.S1_at1/113+13581669..13584129IQ calmodulin-binding motif family protein, expressed
LOC_Os03g23970Os.48046.1.S1_at11/113+13584309..13586918diphthine synthase, putative, expressed
LOC_Os03g23980Os.12615.1.A1_at11/113+13587728..13590913NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g23990NANA3+13593871..13596424transposon protein, putative, unclassified
LOC_Os03g24000OsAffx.20387.1.S1_x_at2/113+13597144..13598570retrotransposon protein, putative, unclassified
LOC_Os03g24010Os.25754.2.S1_x_at1/113+13599323..13602221hypothetical protein
LOC_Os03g24020Os.7949.1.S1_at11/113+13606394..1360916550S ribosomal protein L6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12998.1.S1_x_at--562--6671Chr03:13583529..13583553 (25 bp)
GTTCGATAAGGACATCCCCGTCGCG
LOC_Os03g23960
OsAffx.12998.1.S1_x_at--832--9331Chr03:13583549..13583573 (25 bp)
TCGCGCACCAATCTCCAAGCAGGGA
LOC_Os03g23960
OsAffx.12998.1.S1_x_at--158--1831Chr03:13583681..13583705 (25 bp)
ACGCCGACAGGCAGCTCGGGTACTC
LOC_Os03g23960
OsAffx.12998.1.S1_x_at--190--7831Chr03:13583699..13583723 (25 bp)
GGTACTCGGCGAGGCGGTCATTCAC
LOC_Os03g23960
OsAffx.12998.1.S1_x_at--510--831Chr03:13583710..13583734 (25 bp)
AGGCGGTCATTCACCCGCGCCGGGA
LOC_Os03g23960
OsAffx.12998.1.S1_x_at--394--3211Chr03:13583811..13583835 (25 bp)
CAAGGCCAAGTTCCGGTCCATGAGC
LOC_Os03g23960
OsAffx.12998.1.S1_x_at--708--691Chr03:13583830..13583854 (25 bp)
ATGAGCACGCCCAAGGAGCGCTCCG
LOC_Os03g23960
OsAffx.12998.1.S1_x_at--1072--4671Chr03:13583866..13583890 (25 bp)
GCGGACGCCTACTCGGAGCAGTGCT
LOC_Os03g23960
OsAffx.12998.1.S1_x_at--220--8051Chr03:13583880..13583904 (25 bp)
GGAGCAGTGCTTCCCGTTCGCCGAC
LOC_Os03g23960
OsAffx.12998.1.S1_x_at--600--511Chr03:13583959..13583983 (25 bp)
ATCGTCTTCGCGAGGTCCAGCCGGC
LOC_Os03g23960
OsAffx.12998.1.S1_x_at--28--8111Chr03:13584058..13584082 (25 bp)
GGACGCCACAGCTTCGGCTCCGAGG
LOC_Os03g23960
Target Sequence 
GTTCGATAAGGACATCCCCGTCGCGCACCAATCTCCAAGCAGGGACGCCGCCGGCGCCGCCATGAACGACGACGAACGCC
CGCCGCCGCCGCCGGTGCTCCGGTCCAGGTCCAGGGCCGACAGGCTCGCCTGCGTCGGCGGCGACGACGACGACGCCGAC
AGGCAGCTCGGGTACTCGGCGAGGCGGTCATTCACCCGCGCCGGGAGGCGCACGCCGGCGAGGGACGACGACGGCGGCGG
CGCGGCGGCGTTCCCGGGGTACATGGCGTCGACGGCGTCGGCCAAGGCCAAGTTCCGGTCCATGAGCACGCCCAAGGAGC
GCTCCGGCGCCGGCGCGGCGGACGCCTACTCGGAGCAGTGCTTCCCGTTCGCCGACCGCCTCCTGTCGCCGATCCCCTCC
ATGTCGCCGATCCCGTCCATCGCCAGCGACATCGTCTTCGCGAGGTCCAGCCGGCCGGCGGCGGCGCAGCGGTCGCCGCG
GGTGAAGGGGCCCATGACGCCGACGAGGTCCCGGTCCCGGAGGTCGCCGGGACGCCACAGCTTCGGCTCCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12998.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis