Browse Element(s) Details


OsAffx.1328.1.S1_at

Description gb:NM_187979.1
DB_XREF= gi:34903041
TID=OsAffx.1328.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g158194/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15780Os.27791.1.S1_at10/111+8882308..8888246glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g15790Os.45994.2.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_x_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.10459.1.S1_at9/111+8889381..8896918expressed protein
LOC_Os01g15800OsAffx.2016.1.S1_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15800OsAffx.2016.1.S1_x_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15810Os.10270.1.S1_at11/111+8900136..8902218Peroxidase 9 precursor, putative, expressed
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein
LOC_Os01g15860Os.10271.2.S1_x_at11/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15860Os.10271.1.S1_x_at1/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15880NANA1+8936150..8939415retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1328.1.S1_at--992--771Chr01:8913052..8913076 (25 bp)
ATGTGCCATGTACCAACTCTCAACA
NONE
OsAffx.1328.1.S1_at--824--2171Chr01:8912967..8912987 (21 bp)
ACACGGTTCTTCAACTGTTCCAAGG
NONE
OsAffx.1328.1.S1_at--126--8811Chr01:8912952..8912976 (25 bp)
TGTTCCAAGGCTTTGTCACCGGCAG
NONE
OsAffx.1328.1.S1_at--912--3371Chr01:8912930..8912954 (25 bp)
CAGCCTTGTTCTTCTGTGAAGCACA
NONE
OsAffx.1328.1.S1_at--938--5111Chr01:8912910..8912934 (25 bp)
GCACATATCAGTGGCCGTTTCTTGA
NONE
OsAffx.1328.1.S1_at--1035--5051Chr01:8912880..8912904 (25 bp)
GCAGCATGGCGGTTGTTACAGTCAC
NONE
OsAffx.1328.1.S1_at--564--8792Chr07:6356525..6356544 (20 bp)
TGTTACAGTCACAGGCTCACAGAGA
NONE
OsAffx.1328.1.S1_at--38--10091Chr01:8912353..8912377 (25 bp)
TAGGGCATTACCATGGCAAGTACAC
LOC_Os01g15819
OsAffx.1328.1.S1_at--460--6211Chr01:8912310..8912334 (25 bp)
GAGGCTACAGATTTGGCATCCCTAC
LOC_Os01g15819
OsAffx.1328.1.S1_at--1037--531Chr01:8912293..8912317 (25 bp)
ATCCCTACTGCCAAAACCTTAGAGG
LOC_Os01g15819
OsAffx.1328.1.S1_at--708--9091Chr01:8912240..8912264 (25 bp)
TGCTCATTTGACTTCTGTTGTGTTG
NONE
Target Sequence 
ATGTGCCATGTACCAACTCTCAACACACGGTTCTTCAACTGTTCCAAGGCTTTGTCACCGGCAGCCTTGTTCTTCTGTGA
AGCACATATCAGTGGCCGTTTCTTGAAGGAAGCAGCATGGCGGTTGTTACAGTCACAGGCTCACAGAGACAGTCACAGTA
ATTATTGTTGTAATGTACTCACAACTCATGTGGTAGGGCATTACCATGGCAAGTACACACGCCACATGCCTCAAAGGAGG
CTACAGATTTGGCATCCCTACTGCCAAAACCTTAGAGGAGACAAAAGTGAGATGAGCAAGAGTACCTGCTCATTTGACTT
CTGTTGTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis