Browse Element(s) Details


OsAffx.13345.1.S1_at

Description tigr:9631.m04303
TID=OsAffx.13345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4456010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44540Os.54660.1.S1_at11/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_x_at2/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_at1/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44544NANA3+25028842..25030099hypothetical protein
LOC_Os03g44550OsAffx.18103.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.19857.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.15708.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44560Os.51162.1.S1_at11/113+25047207..25051073expressed protein
LOC_Os03g44560OsAffx.13345.1.S1_at10/113+25047207..25051073expressed protein
LOC_Os03g44580Os.18246.1.S1_at11/113+25056028..25058800expressed protein
LOC_Os03g44590NANA3+25061381..25064807transposon protein, putative, Mutator sub-class
LOC_Os03g44600OsAffx.27271.1.S1_at11/113+25065210..25065793hypothetical protein
LOC_Os03g44610Os.9033.1.S1_at10/113+25070355..25078460IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13345.1.S1_at--1111--9551Chr03:25050198..25050222 (25 bp)
TCTTCACCCTGACATTCCTGTGGAG
LOC_Os03g44560
OsAffx.13345.1.S1_at--703--2071Chr03:25050187..25050211 (25 bp)
ACATTCCTGTGGAGGGCATCGGGCC
LOC_Os03g44560
OsAffx.13345.1.S1_at--417--3551Chr03:25050171..25050195 (25 bp)
CATCGGGCCTGGGTTTTTACGTGCG
LOC_Os03g44560
OsAffx.13345.1.S1_at--780--10351Chr03:25050157..25050181 (25 bp)
TTTTACGTGCGAATAGTCTACATAG
LOC_Os03g44560
OsAffx.13345.1.S1_at--1034--5391Chr03:25050125..25050149 (25 bp)
GAAGCTCTTTTCTGTGGGTACTGGT
LOC_Os03g44560
OsAffx.13345.1.S1_at--742--3671Chr03:25049788..25050143 (25 bp)
CTTTTCTGTGGGTACTGGTTATGCA
LOC_Os03g44560
OsAffx.13345.1.S1_at--20--7691Chr03:25049787..25050134 (25 bp)
GGGTACTGGTTATGCAAGTATGCAA
LOC_Os03g44560
OsAffx.13345.1.S1_at--1055--5231Chr03:25049757..25049781 (25 bp)
GAATACTTTGGTGATTTTGTCATAT
LOC_Os03g44560
OsAffx.13345.1.S1_at--244--5111Chr03:25049721..25049745 (25 bp)
GAAGGAAGCCTTCTAGTTTTCTTAT
LOC_Os03g44560
OsAffx.13345.1.S1_at--775--3651Chr03:25049715..25049736 (22 bp)
CTTCTAGTTTTCTTATCACCTGCCA
LOC_Os03g44560
OsAffx.13345.1.S1_at--428--6811NONE
GTTTTCTTATCACCTGCCACAGCTG
NONE
Target Sequence 
TCTTCACCCTGACATTCCTGTGGAGGGCATCGGGCCTGGGTTTTTACGTGCGAATAGTCTACATAGTGACATAGAAGCTC
TTTTCTGTGGGTACTGGTTATGCAAGTATGCAACATATGAATACTTTGGTGATTTTGTCATATTATATTGTGGTGAAGGA
AGCCTTCTAGTTTTCTTATCACCTGCCACAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis