Browse Element(s) Details


OsAffx.13563.1.S1_at

Description tigr:9631.m05976
TID=OsAffx.13563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6066011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60650Os.19321.1.S1_at11/113+34413629..34417304protein phosphatase 2C family protein, putative, expressed
LOC_Os03g60660OsAffx.13563.1.S1_at11/113+34426986..34427672hypothetical protein
LOC_Os03g60670OsAffx.32189.1.S1_x_at11/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.26477.1.S1_x_at9/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670Os.48352.1.A1_at4/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60670OsAffx.30473.2.S1_x_at1/113+34427866..34431309retrotransposon protein, putative, unclassified
LOC_Os03g60690Os.24124.1.S1_at9/113+34432199..34435791expressed protein
LOC_Os03g60700Os.4641.2.S1_at11/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60700Os.4641.1.S1_x_at8/113+34437179..34440227glycosyl transferase, group 2 family protein, expressed
LOC_Os03g60710Os.32445.2.S1_x_at11/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60710Os.32445.1.S1_at6/113+34441923..34446690Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13563.1.S1_at--177--10171Chr03:34427078..34427102 (25 bp)
TATACTGGAGGTCTCACCGAAGCTG
LOC_Os03g60660
OsAffx.13563.1.S1_at--201--4091Chr03:34427154..34427178 (25 bp)
CGAAGAACCAAATGCTCCACCCTGA
LOC_Os03g60660
OsAffx.13563.1.S1_at--799--9211Chr03:34427169..34427193 (25 bp)
TCCACCCTGACATTGCCAATTCGAA
LOC_Os03g60660
OsAffx.13563.1.S1_at--628--5431Chr03:34427235..34427259 (25 bp)
GAACCTATTGTCATGTCACTTCATA
LOC_Os03g60660
OsAffx.13563.1.S1_at--1125--271Chr03:34427257..34427281 (25 bp)
ATAGGCTATTATCCACCCAGACATT
LOC_Os03g60660
OsAffx.13563.1.S1_at--192--8091Chr03:34427378..34427402 (25 bp)
GGAGCTCGCCGAAATGCTAGAACAA
LOC_Os03g60660
OsAffx.13563.1.S1_at--225--5771Chr03:34427454..34427478 (25 bp)
GACGATTTCAAATGGCTGGGACAGT
LOC_Os03g60660
OsAffx.13563.1.S1_at--826--4871Chr03:34427484..34427508 (25 bp)
GCTATTCTACGGGAGGCTGAGCAGA
LOC_Os03g60660
OsAffx.13563.1.S1_at--311--1331Chr03:34427508..34427532 (25 bp)
AGAGGCAACGTCCTTGTTGGCACAA
LOC_Os03g60660
OsAffx.13563.1.S1_at--503--3431Chr03:34427578..34427602 (25 bp)
CAGATGATCTTTACGGCTTTGCGCG
LOC_Os03g60660
OsAffx.13563.1.S1_at--1107--1931Chr03:34427590..34427614 (25 bp)
ACGGCTTTGCGCGTACTGTGGATAG
LOC_Os03g60660
Target Sequence 
TATACTGGAGGTCTCACCGAAGCTGGAGAAGAGACCTAGCAAACGGATGAAGCGTTCTCAACATATTGAGTTCGACCGAA
GAACCAAATGCTCCACCCTGACATTGCCAATTCGAAAACTGCAGGTATCAACTGAAAAGACGGAGGAGGAGAGTTCTGAA
CCTATTGTCATGTCACTTCATAGGCTATTATCCACCCAGACATTGCCAATGCAAAATCTGAAGATATCAACTAAAAAGAC
GGAGGAGACCATCACGAGTGAGGAGCTTGAAAATACAGAGGTGCTAGTGGAGGATCAGAAGGAGCTCGCCGAAATGCTAG
AACAAGTGCTGATCTGTATGGGCAGGGCTGTCGAGGAGGCAGATGAAAGAAACTTGGACGATTTCAAATGGCTGGGACAG
TGGGCGGCTATTCTACGGGAGGCTGAGCAGAGAGGCAACGTCCTTGTTGGCACAATCTTCGCCGGCCGTGACGGCGATGG
CAAAGCTGGCAGTGAGAAAGCAGATGATCTTTACGGCTTTGCGCGTACTGTGGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis