Browse Element(s) Details


OsAffx.13822.1.S1_at

Description tigr:9632.m01382
TID=OsAffx.13822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1553011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14990OsAffx.3796.1.S1_at11/114+8402335..8404471BURP domain containing protein
LOC_Os04g15000OsAffx.26037.1.S1_at11/114+8406155..8407245hypothetical protein
LOC_Os04g15510OsAffx.26038.1.S1_at11/114+8413130..8415433hypothetical protein
LOC_Os04g15520Os.10731.1.A1_a_at11/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.38764.1.S1_x_at6/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520OsAffx.11280.1.S1_at4/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.48015.1.A1_x_at3/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15530OsAffx.13822.1.S1_at11/114+8425046..8428682retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g15550Os.17370.1.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.2.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.3.S1_at8/114+8433671..8441689expressed protein
LOC_Os04g15560OsAffx.13823.1.S1_at11/114+8442769..8444173Leucine Rich Repeat family protein
LOC_Os04g15570Os.27639.1.S1_x_at9/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570OsAffx.8980.1.S1_at6/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570Os.53731.1.S1_at2/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15580Os.23398.1.S1_at11/114+8452667..8455983D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13822.1.S1_at--283--6031Chr04:8425222..8425246 (25 bp)
GAGATGGACCGGCAAGCTCTGCTAT
LOC_Os04g15530
OsAffx.13822.1.S1_at--687--7191Chr04:8425276..8425300 (25 bp)
GTCGGTGTCCTGCACTCATGGAGCA
LOC_Os04g15530
OsAffx.13822.1.S1_at--841--1991Chr04:8425308..8425332 (25 bp)
ACTCGACTTCTGCAACTGGAGCGGG
LOC_Os04g15530
OsAffx.13822.1.S1_at--1113--6251Chr04:8426511..8426530 (20 bp)
GATGTGGTGATATCCCTGGGTTATT
LOC_Os04g15530
OsAffx.13822.1.S1_at--882--6051Chr04:8426554..8426578 (25 bp)
GAGTTGTCAATCTTGCCTTCAACAG
LOC_Os04g15530
OsAffx.13822.1.S1_at--64--2491Chr04:8426574..8426598 (25 bp)
AACAGCCTTGCTGGAGGTATCCCTC
LOC_Os04g15530
OsAffx.13822.1.S1_at--904--10011Chr04:8426605..8426629 (25 bp)
TAGCATCTAGCTCATCACTTACAGT
LOC_Os04g15530
OsAffx.13822.1.S1_at--611--8151Chr04:8426658..8426682 (25 bp)
GGAACAATCCCTGCCAGTTTGTTTA
LOC_Os04g15530
OsAffx.13822.1.S1_at--141--671Chr04:8426718..8426742 (25 bp)
ATGAATGCATTCTCTGGGCCTATAC
LOC_Os04g15530
OsAffx.13822.1.S1_at--581--6271Chr04:8426756..8426780 (25 bp)
GATGTCTGCTCTCCAAATTCTTAAC
LOC_Os04g15530
OsAffx.13822.1.S1_at--100--10331Chr04:8426830..8426854 (25 bp)
TTTCTTCCATCAATCTCATATCTCT
LOC_Os04g15530
Target Sequence 
GAGATGGACCGGCAAGCTCTGCTATCCTTCAAGGCCAGCACCTCCTCTGACCCAGTCGGTGTCCTGCACTCATGGAGCAC
CAGCTCACTCGACTTCTGCAACTGGAGCGGGGTCAGATGTGGTGATATCCCTGGGTTATTAGGTACTGGAAGCAAATCTC
TTAGAGTTGTCAATCTTGCCTTCAACAGCCTTGCTGGAGGTATCCCTCATTCCTTAGCATCTAGCTCATCACTTACAGTG
CTAAACCTGACAAATAATTTGTTCTTTGGAACAATCCCTGCCAGTTTGTTTAATGGCTCATCTAATCTTGCCATCATTGA
TCTTCGAATGAATGCATTCTCTGGGCCTATACCAAATTTCTATAAGATGTCTGCTCTCCAAATTCTTAACCTTGCACAAA
ACAATCTTTCTGGAAGCATTCCTCCATCTCTAGGGAAAGTTTCTTCCATCAATCTCATATCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis