Browse Element(s) Details


OsAffx.13823.1.S1_at

Description tigr:9632.m01385
TID=OsAffx.13823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1556011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15520Os.10731.1.A1_a_at11/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.38764.1.S1_x_at6/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520OsAffx.11280.1.S1_at4/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15520Os.48015.1.A1_x_at3/114+8420054..8421698retrotransposon protein, putative, unclassified
LOC_Os04g15530OsAffx.13822.1.S1_at11/114+8425046..8428682retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g15550Os.17370.1.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.2.S1_x_at11/114+8433671..8441689expressed protein
LOC_Os04g15550Os.17370.3.S1_at8/114+8433671..8441689expressed protein
LOC_Os04g15560OsAffx.13823.1.S1_at11/114+8442769..8444173Leucine Rich Repeat family protein
LOC_Os04g15570Os.27639.1.S1_x_at9/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570OsAffx.8980.1.S1_at6/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15570Os.53731.1.S1_at2/114+8445396..8450822transposon protein, putative, unclassified
LOC_Os04g15580Os.23398.1.S1_at11/114+8452667..8455983D-mannose binding lectin family protein, expressed
LOC_Os04g15590OsAffx.13824.1.S1_at11/114+8461347..8462472hypothetical protein
LOC_Os04g15600OsAffx.13825.1.S1_at11/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_x_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15600OsAffx.28833.1.S1_at1/114+8464554..8465838Leucine Rich Repeat family protein, expressed
LOC_Os04g15610NANA4+8466220..8472318retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13823.1.S1_at--756--10071Chr04:8443250..8443274 (25 bp)
TAGTGATTCCTCCTGTTACTATCGT
LOC_Os04g15560
OsAffx.13823.1.S1_at--1034--2031Chr04:8443267..8443291 (25 bp)
ACTATCGTCGTATTGTCATTCTTCT
LOC_Os04g15560
OsAffx.13823.1.S1_at--1114--5551Chr04:8443316..8443340 (25 bp)
GAAAGCAAGCGCATACGACTTCATG
LOC_Os04g15560
OsAffx.13823.1.S1_at--1070--6651Chr04:8443372..8443396 (25 bp)
GTTGACATCCTTAAGGCCACCAATT
LOC_Os04g15560
OsAffx.13823.1.S1_at--958--7891Chr04:8443397..8443421 (25 bp)
GGTTCTCCCCTGTCAACAAGATAAG
LOC_Os04g15560
OsAffx.13823.1.S1_at--699--1271Chr04:8443415..8443439 (25 bp)
AGATAAGCTCGAGTCATACTGGTTC
LOC_Os04g15560
OsAffx.13823.1.S1_at--441--4171Chr04:8443557..8443581 (25 bp)
CGCCATCGCAACCTTGTTAAAGCAA
LOC_Os04g15560
OsAffx.13823.1.S1_at--454--10131Chr04:8443588..8443612 (25 bp)
TATGCTCCACGGTCGACCTAGAGAA
LOC_Os04g15560
OsAffx.13823.1.S1_at--542--8131Chr04:8443661..8443685 (25 bp)
GGACATGTGGGTTCATCCAAAGCTA
LOC_Os04g15560
OsAffx.13823.1.S1_at--949--6771Chr04:8444056..8444080 (25 bp)
GTTACTGCTTGAAATGCTCACTGGA
LOC_Os04g15560
OsAffx.13823.1.S1_at--97--8291Chr04:8444111..8444135 (25 bp)
GGCATCAGCCTTCACAAGTTTGTTA
LOC_Os04g15560
Target Sequence 
TAGTGATTCCTCCTGTTACTATCGTCGTATTGTCATTCTTCTTTTTTATGGTGACACTTCTGAAGGGAAAGCAAGCGCAT
ACGACTTCATGCTACAAAGAGACAATGAAGAAAGTATCATATGTTGACATCCTTAAGGCCACCAATTGGTTCTCCCCTGT
CAACAAGATAAGCTCGAGTCATACTGGTTCGATATACATTGGAAGCTTTCTTACTGAGTGTGAGGTGCTAAGAAACACCC
GCCATCGCAACCTTGTTAAAGCAATCACCGTATGCTCCACGGTCGACCTAGAGAACAATGAATTCAAAGCTATAGTTTTG
GAGTTCATGGCCAATGGAAGCTTGGACATGTGGGTTCATCCAAAGCTACATCAAAATAGTCCCAAGAGAGAGTATGGAAT
GGGATACAAAATCTCGACCGGATGTGATGTGTACAGTTTTGGAGTGTTACTGCTTGAAATGCTCACTGGAATGAGACCGA
CAGATGCAATGTTCATCGACGGCATCAGCCTTCACAAGTTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis