Browse Element(s) Details


OsAffx.13830.1.S1_x_at

Description tigr:9632.m01411
TID=OsAffx.13830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1581011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g15760OsAffx.13829.1.S1_at7/114+8537931..8545692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g15770NANA4+8547533..8548168retrotransposon protein, putative, unclassified
LOC_Os04g15780OsAffx.3799.1.S1_at11/114+8550820..8553639hypothetical protein
LOC_Os04g15780OsAffx.31813.1.S1_x_at2/114+8550820..8553639hypothetical protein
LOC_Os04g15780Os.54523.1.S1_at1/114+8550820..8553639hypothetical protein
LOC_Os04g15790Os.6166.1.S1_at10/114+8558818..8565548Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g15800Os.18568.1.S1_at11/114+8566257..8568084expressed protein
LOC_Os04g15810OsAffx.13830.1.S1_x_at11/114+8568385..8568884hypothetical protein
LOC_Os04g15820Os.49490.1.S1_at1/114+8571213..8573158hypothetical protein
LOC_Os04g15840Os.2696.1.S1_at11/114+8578856..8580134Alpha-expansin 11 precursor, putative, expressed
LOC_Os04g15850Os.45976.1.S1_at2/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15850Os.45976.1.S1_x_at1/114+8581156..8584691transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.46306.1.S1_x_at7/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g15870Os.27037.1.A1_at1/114+8587743..8592463transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13830.1.S1_x_at--951--2891Chr04:8568820..8568844 (25 bp)
AAGGTGCAAGCAACCTGAGGCCACG
LOC_Os04g15810
OsAffx.13830.1.S1_x_at--789--1031Chr04:8568819..8568843 (25 bp)
AGGTGCAAGCAACCTGAGGCCACGA
LOC_Os04g15810
OsAffx.13830.1.S1_x_at--803--7751Chr04:8568818..8568842 (25 bp)
GGTGCAAGCAACCTGAGGCCACGAC
LOC_Os04g15810
OsAffx.13830.1.S1_x_at--477--7351Chr04:8568817..8568841 (25 bp)
GTGCAAGCAACCTGAGGCCACGACG
LOC_Os04g15810
OsAffx.13830.1.S1_x_at--722--9011Chr04:8568816..8568840 (25 bp)
TGCAAGCAACCTGAGGCCACGACGG
LOC_Os04g15810
OsAffx.13830.1.S1_x_at--402--5171Chr04:8568815..8568839 (25 bp)
GCAAGCAACCTGAGGCCACGACGGC
LOC_Os04g15810
OsAffx.13830.1.S1_x_at--975--3231Chr04:8568814..8568838 (25 bp)
CAAGCAACCTGAGGCCACGACGGCT
LOC_Os04g15810
OsAffx.13830.1.S1_x_at--697--3251Chr04:8568810..8568834 (25 bp)
CAACCTGAGGCCACGACGGCTGTGC
LOC_Os04g15810
OsAffx.13830.1.S1_x_at--1099--9151Chr04:8568788..8568812 (25 bp)
TGCGCGGCGAAGGAGAATCGGCGAC
LOC_Os04g15810
OsAffx.13830.1.S1_x_at--998--971Chr04:8568778..8568802 (25 bp)
AGGAGAATCGGCGACGACGACTGAA
LOC_Os04g15810
OsAffx.13830.1.S1_x_at--10--5251Chr04:8568774..8568798 (25 bp)
GAATCGGCGACGACGACTGAACGGC
LOC_Os04g15810
Target Sequence 
AAGGTGCAAGCAACCTGAGGCCACGACGGCTGTGCGCGGCGAAGGAGAATCGGCGACGACGACTGAACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13830.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis