Browse Element(s) Details


OsAffx.13884.1.S1_at

Description tigr:9632.m01851
TID=OsAffx.13884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glucosyltransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2026011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20220OsAffx.26078.1.S1_at11/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S1_at10/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220OsAffx.26078.1.S1_s_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.16925.1.S2_at9/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20220Os.39411.1.A1_at2/114+11247793..11261590G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os04g20230Os.20498.1.S1_at10/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.13883.1.S1_at8/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20230OsAffx.573.1.S1_x_at1/114+11265185..11269440Uncharacterised protein family containing protein, expressed
LOC_Os04g20240OsAffx.27522.1.S1_x_at11/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_x_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20240OsAffx.3613.1.S1_at1/114+11272027..11273254retrotransposon protein, putative, unclassified
LOC_Os04g20249NANA4+11275990..11276633NA
LOC_Os04g20260OsAffx.13884.1.S1_at11/114+11284750..11286306UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20270Os.2316.1.S1_a_at11/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270Os.40082.1.A1_x_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20270OsAffx.27348.1.A1_at1/114+11291520..11303849Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os04g20280Os.12757.1.S1_a_at11/114+11310700..11314090protein tyrosine phosphatase, putative, expressed
LOC_Os04g20280Os.12757.4.S1_x_at1/114+11310700..11314090protein tyrosine phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009808biological_processlignin metabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13884.1.S1_at--454--991Chr04:11285325..11285349 (25 bp)
AGGTTCGTCTGGGTGATCCGGCCGC
LOC_Os04g20260
OsAffx.13884.1.S1_at--252--1231Chr04:11285276..11285300 (25 bp)
AGTTCTCGCCGGAGTGGCTGCCTGA
LOC_Os04g20260
OsAffx.13884.1.S1_at--439--9511Chr04:11285081..11285105 (25 bp)
TCTCGGCGGAGCAATTCTACAACTC
LOC_Os04g20260
OsAffx.13884.1.S1_at--955--5931Chr04:11285073..11285097 (25 bp)
GAGCAATTCTACAACTCCAAGCTGC
LOC_Os04g20260
OsAffx.13884.1.S1_at--554--9531Chr04:11285066..11285090 (25 bp)
TCTACAACTCCAAGCTGCTCGCGGA
LOC_Os04g20260
OsAffx.13884.1.S1_at--242--671Chr04:11284911..11284935 (25 bp)
ATGAAGGAGGCAATCGACGCGGCGA
LOC_Os04g20260
OsAffx.13884.1.S1_at--844--3951Chr04:11284854..11284878 (25 bp)
CGGAGGTTCTTGGACGAGGTGTTGC
LOC_Os04g20260
OsAffx.13884.1.S1_at--874--8391Chr04:11284821..11284845 (25 bp)
GGCGCTCAGTTCATGGCCTCATGGG
LOC_Os04g20260
OsAffx.13884.1.S1_at--130--1231Chr04:11284814..11284838 (25 bp)
AGTTCATGGCCTCATGGGCGCTCCA
LOC_Os04g20260
OsAffx.13884.1.S1_at--989--791Chr04:11284801..11284825 (25 bp)
ATGGGCGCTCCAATCAGCATGCTTT
LOC_Os04g20260
OsAffx.13884.1.S1_at--524--3071Chr04:11284790..11284814 (25 bp)
AATCAGCATGCTTTCGGGACGGCGC
LOC_Os04g20260
Target Sequence 
AGGTTCGTCTGGGTGATCCGGCCGCCGGCGGGGAACGACGCGAACGGCGAGTTCTCGCCGGAGTGGCTGCCTGAGGGGTT
CAGGGAGCGCGCGGAGGCGGAGGGGCGCGGGCTGGTGGTGCGGTGCTGGGCGCCGCAGGTGGAGATCCTGGCGCACACCG
CCACCGGCGCGTTCCTGACGCACTGCGGCTGGAACTCCGTGCAGGAGGCGCTCGGCCACGGCGTGCCGCTGCTCGGGTGG
CCGCTCTCGGCGGAGCAATTCTACAACTCCAAGCTGCTCGCGGAGGAGATGGTGTGCGTGGAGGTGGCGCGCGGGAGCGC
CGCCGTGGACGCGGCCAAGGTGGCAGCTGCCGTGGAGGCGGTGCTCGGCGAGACGTCGATGGAGCGCGCCGCGATGAAGC
GGAGAGCGGCAGAGATGAAGGAGGCAATCGACGCGGCGAGGGACGGCGACAAATCGTCGGTGACGGTGATGCGGAGGTTC
TTGGACGAGGTGTTGCCGCCGCGCGGCGCTCAGTTCATGGCCTCATGGGCGCTCCAATCAGCATGCTTTCGGGACGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis