Browse Element(s) Details


OsAffx.13919.1.S1_at

Description tigr:9632.m02054
TID=OsAffx.13919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2226011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22210OsAffx.26093.1.S1_at11/114+12560644..12562194SCP-like extracellular protein
LOC_Os04g22220Os.57208.1.S1_at11/114+12563861..12564567SCP-like extracellular protein, expressed
LOC_Os04g22230OsAffx.26094.1.S1_at11/114+12566808..12567374SCP-like extracellular protein
LOC_Os04g22240OsAffx.3855.1.S1_at11/114+12573097..12578028transcription factor, putative, expressed
LOC_Os04g22250NANA4+12582271..12582507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22260OsAffx.13919.1.S1_at11/114+12583677..12583895hypothetical protein
LOC_Os04g22270OsAffx.20519.2.S1_at11/114+12584869..12587531expressed protein
LOC_Os04g22270Os.38286.1.S1_at10/114+12584869..12587531expressed protein
LOC_Os04g22270OsAffx.20519.1.S1_at1/114+12584869..12587531expressed protein
LOC_Os04g22280OsAffx.3857.1.S1_x_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22280OsAffx.3857.1.S1_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22290OsAffx.28610.3.S1_at11/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_x_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_x_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.4.S1_x_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22290Os.4760.1.S1_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22300Os.32374.2.S1_x_at4/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.2.S1_at3/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.3.S1_x_at2/114+12605742..12607406hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13919.1.S1_at--197--411Chr04:12583841..12583865 (25 bp)
ATCATGAATGAAACCATGCCTGGAA
LOC_Os04g22260
OsAffx.13919.1.S1_at--757--8991Chr04:12583837..12583861 (25 bp)
TGAATGAAACCATGCCTGGAAGCAA
LOC_Os04g22260
OsAffx.13919.1.S1_at--332--591Chr04:12583826..12583850 (25 bp)
ATGCCTGGAAGCAAATCACCCGGCC
LOC_Os04g22260
OsAffx.13919.1.S1_at--567--8191Chr04:12583821..12583845 (25 bp)
TGGAAGCAAATCACCCGGCCGGAAT
LOC_Os04g22260
OsAffx.13919.1.S1_at--952--8151Chr04:12583820..12583844 (25 bp)
GGAAGCAAATCACCCGGCCGGAATG
LOC_Os04g22260
OsAffx.13919.1.S1_at--521--371Chr04:12583812..12583836 (25 bp)
ATCACCCGGCCGGAATGATGAAAGT
LOC_Os04g22260
OsAffx.13919.1.S1_at--523--4191Chr04:12583808..12583832 (25 bp)
CCCGGCCGGAATGATGAAAGTGATT
LOC_Os04g22260
OsAffx.13919.1.S1_at--83--5331Chr04:12583740..12583762 (23 bp)
GAAGTCATTAGATCTAGGAGGTTTC
LOC_Os04g22260
OsAffx.13919.1.S1_at--352--3591Chr04:12583735..12583759 (25 bp)
CATTAGATCTAGGAGGTTTCAACTT
LOC_Os04g22260
OsAffx.13919.1.S1_at--71--3711Chr04:12583727..12583751 (25 bp)
CTAGGAGGTTTCAACTTATTGGCTT
LOC_Os04g22260
OsAffx.13919.1.S1_at--828--6151Chr04:12583723..12583747 (25 bp)
GAGGTTTCAACTTATTGGCTTGGGA
LOC_Os04g22260
Target Sequence 
ATCATGAATGAAACCATGCCTGGAAGCAAATCACCCGGCCGGAATGATGAAAGTGATTTGTTAAATGTGAAGTCATTAGA
TCTAGGAGGTTTCAACTTATTGGCTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis