Browse Element(s) Details


OsAffx.14075.1.S1_at

Description tigr:9632.m03015
TID=OsAffx.14075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3168011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31640OsAffx.26274.1.S1_at9/114+18769047..18771463hypothetical protein
LOC_Os04g31640OsAffx.17597.1.S1_x_at1/114+18769047..18771463hypothetical protein
LOC_Os04g31650Os.35344.3.S1_x_at9/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650Os.35344.18.S1_x_at6/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650OsAffx.22940.5.S1_x_at3/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31660OsAffx.14073.1.S1_at11/114+18779551..18779973hypothetical protein
LOC_Os04g31670OsAffx.14074.1.S1_at11/114+18788451..18789343hypothetical protein
LOC_Os04g31670Os.52101.1.S1_at10/114+18788451..18789343hypothetical protein
LOC_Os04g31680OsAffx.14075.1.S1_at11/114+18790715..18792054hypothetical protein
LOC_Os04g31690Os.11184.1.S1_at11/114+18797458..18800398expressed protein
LOC_Os04g31700Os.8672.1.S1_at11/114+18800365..18805535methylisocitrate lyase 2, putative, expressed
LOC_Os04g31710OsAffx.3968.1.S1_at11/114+18807125..18808116expressed protein
LOC_Os04g31720OsAffx.26275.1.S1_at11/114+18808476..18809186hypothetical protein
LOC_Os04g31730Os.50181.1.S1_at10/114+18810476..18811405expressed protein
LOC_Os04g31740OsAffx.3969.1.S1_at10/114+18813961..18814651hypothetical protein
LOC_Os04g31750OsAffx.14076.1.S1_at11/114+18816251..18817073hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14075.1.S1_at--1095--5571Chr04:18791983..18792007 (25 bp)
GAAATGCAACCTGATTGAACCCGCC
LOC_Os04g31680
OsAffx.14075.1.S1_at--535--51Chr04:18791970..18791994 (25 bp)
ATTGAACCCGCCCAAGTGGTGAGCG
LOC_Os04g31680
OsAffx.14075.1.S1_at--677--7371Chr04:18791952..18791976 (25 bp)
GTGAGCGGCAACAGAGCTGGAAATC
LOC_Os04g31680
OsAffx.14075.1.S1_at--427--6531Chr04:18791465..18791489 (25 bp)
GATTTCAAAAACCATGCGGCGCTTT
LOC_Os04g31680
OsAffx.14075.1.S1_at--226--3931Chr04:18791449..18791473 (25 bp)
CGGCGCTTTGTGCTCACTGAAATCA
LOC_Os04g31680
OsAffx.14075.1.S1_at--622--4651Chr04:18791325..18791444 (25 bp)
GCGTCGCATTCATGGCCAGTGTGCA
LOC_Os04g31680
OsAffx.14075.1.S1_at--880--10331Chr04:18791269..18791293 (25 bp)
TTTACCCTGGCACTGTTCGTTCAGG
LOC_Os04g31680
OsAffx.14075.1.S1_at--631--9111Chr04:18791227..18791251 (25 bp)
TGCTGCAGAGTCTGTATGGATACAG
LOC_Os04g31680
OsAffx.14075.1.S1_at--102--7951Chr04:18791210..18791234 (25 bp)
GGATACAGATATGCCTTTGTCACAG
LOC_Os04g31680
OsAffx.14075.1.S1_at--669--591Chr04:18790788..18791224 (25 bp)
ATGCCTTTGTCACAGTGCCTCAGGG
LOC_Os04g31680
OsAffx.14075.1.S1_at--1022--2631Chr04:18790761..18790785 (25 bp)
AACCTTCACATGGTTTAGGGCACCA
LOC_Os04g31680
Target Sequence 
GAAATGCAACCTGATTGAACCCGCCCAAGTGGTGAGCGGCAACAGAGCTGGAAATCAGAAAGGCTGCAGGATTTCAAAAA
CCATGCGGCGCTTTGTGCTCACTGAAATCATGGGGCGTCGCATTCATGGCCAGTGTGCACAGTGCCTGCAGCCTCCTGCA
GCTACCATCCTTTACCCTGGCACTGTTCGTTCAGGGGGGCAAAACCTGGGCTTGCTGCAGAGTCTGTATGGATACAGATA
TGCCTTTGTCACAGTGCCTCAGGGGCAACCTTCACATGGTTTAGGGCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis