Browse Element(s) Details


OsAffx.14251.1.S1_at

Description tigr:9632.m04124
TID=OsAffx.14251.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4308011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43060OsAffx.14250.1.S1_at11/114+25273148..25274023enzyme of the cupin superfamily, putative, expressed
LOC_Os04g43070Os.1193.1.S1_at10/114+25281419..25283528Ammonium transporter 1, member 2, putative, expressed
LOC_Os04g43080OsAffx.14251.1.S1_at11/114+25293033..25293470hypothetical protein
LOC_Os04g43090Os.56053.1.S1_at10/114+25299162..25299693expressed protein
LOC_Os04g43090OsAffx.14590.1.S1_x_at5/114+25299162..25299693expressed protein
LOC_Os04g43100OsAffx.14941.4.S1_s_at11/114+25302021..25302888hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_at11/114+25304318..25305003hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_s_at8/114+25304318..25305003hypothetical protein
LOC_Os04g43120OsAffx.14252.1.S1_at10/114+25305794..25306305hypothetical protein
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14251.1.S1_at--279--2651Chr04:25293406..25293430 (25 bp)
AACCAGCCGTGTGGACGCCGCTGTA
LOC_Os04g43080
OsAffx.14251.1.S1_at--973--4691Chr04:25293387..25293411 (25 bp)
GCTGTACCCGGGATCCCTGTACGAG
LOC_Os04g43080
OsAffx.14251.1.S1_at--445--6991Chr04:25293369..25293393 (25 bp)
GTACGAGCCAGCCAGGTTCTGGTCC
LOC_Os04g43080
OsAffx.14251.1.S1_at--1024--3971Chr04:25293285..25293309 (25 bp)
CGGGTTCCTGATCTGCGATGAGCAC
LOC_Os04g43080
OsAffx.14251.1.S1_at--309--6311Chr04:25293269..25293293 (25 bp)
GATGAGCACGGCTTCCGCGTCGAGA
LOC_Os04g43080
OsAffx.14251.1.S1_at--27--3411Chr04:25293210..25293234 (25 bp)
CAGCTTCTGCGCCAGAGTCAAGGTC
LOC_Os04g43080
OsAffx.14251.1.S1_at--985--4551Chr04:25293202..25293226 (25 bp)
GCGCCAGAGTCAAGGTCCTCCAGGA
LOC_Os04g43080
OsAffx.14251.1.S1_at--353--8311Chr04:25293163..25293187 (25 bp)
GGCTCGGCAGCAAAGCCGTCATTGA
LOC_Os04g43080
OsAffx.14251.1.S1_at--862--3591Chr04:25293144..25293168 (25 bp)
CATTGACGTCGAAGAGGTGGCCTGC
LOC_Os04g43080
OsAffx.14251.1.S1_at--299--8831Chr04:25293108..25293132 (25 bp)
TGATTATGACGTGCTAGAGGAGGCC
LOC_Os04g43080
OsAffx.14251.1.S1_at--509--8431Chr04:25293065..25293089 (25 bp)
GGCCTCATCATCGAGTCAGTCGAAG
LOC_Os04g43080
Target Sequence 
AACCAGCCGTGTGGACGCCGCTGTACCCGGGATCCCTGTACGAGCCAGCCAGGTTCTGGTCCATGACTCCGGAGGGATTC
GCGTACGACCCCGTCTTCCCCTTCGCGTCGACGGAGGAGGCCGGGTTCCTGATCTGCGATGAGCACGGCTTCCGCGTCGA
GACGGAGGAGGACGTCGTCGTTGCCGACGACATTGCCAGCTTCTGCGCCAGAGTCAAGGTCCTCCAGGATGAGGCGGCGG
CCCGGCTCGGCAGCAAAGCCGTCATTGACGTCGAAGAGGTGGCCTGCGATGATGATGATGATTATGACGTGCTAGAGGAG
GCCGGCTTTGCCGCTTGCTTCGGCCTCATCATCGAGTCAGTCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis