Browse Element(s) Details


OsAffx.14399.1.S1_at

Description tigr:9632.m05222
TID=OsAffx.14399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F3F19.18
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5377011/11SDA1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed
LOC_Os04g53770OsAffx.14399.1.S1_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770OsAffx.14399.1.S1_x_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770Os.13721.1.S1_at9/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53780Os.52654.1.S1_at11/114+31829999..31832630NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53790Os.27639.1.S1_x_at8/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790OsAffx.8980.1.S1_at6/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790Os.53731.1.S1_at1/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53800Os.23101.1.A1_at11/114+31840453..31843326NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53810Os.48545.1.S1_at11/114+31844692..31846667NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53820Os.35344.3.S1_x_at10/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820Os.35344.18.S1_x_at8/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_at7/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_x_at5/114+31849378..31856913transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14399.1.S1_at--75--2831Chr04:31829139..31829162 (24 bp)
AAGTTGCTTTTATTCCTTCTCTACT
LOC_Os04g53770
OsAffx.14399.1.S1_at--642--1231Chr04:31829139..31829163 (25 bp)
AGTTGCTTTTATTCCTTCTCTACTT
LOC_Os04g53770
OsAffx.14399.1.S1_at--516--6671Chr04:31829140..31829164 (25 bp)
GTTGCTTTTATTCCTTCTCTACTTA
LOC_Os04g53770
OsAffx.14399.1.S1_at--857--10711Chr04:31829141..31829165 (25 bp)
TTGCTTTTATTCCTTCTCTACTTAT
LOC_Os04g53770
OsAffx.14399.1.S1_at--638--4891Chr04:31829143..31829167 (25 bp)
GCTTTTATTCCTTCTCTACTTATAT
LOC_Os04g53770
OsAffx.14399.1.S1_at--217--10371Chr04:31829145..31829169 (25 bp)
TTTTATTCCTTCTCTACTTATATGC
LOC_Os04g53770
OsAffx.14399.1.S1_at--846--10411Chr04:31829147..31829171 (25 bp)
TTATTCCTTCTCTACTTATATGCTT
LOC_Os04g53770
OsAffx.14399.1.S1_at--527--91Chr04:31829149..31829173 (25 bp)
ATTCCTTCTCTACTTATATGCTTCT
LOC_Os04g53770
OsAffx.14399.1.S1_at--944--10671Chr04:31829150..31829174 (25 bp)
TTCCTTCTCTACTTATATGCTTCTC
LOC_Os04g53770
OsAffx.14399.1.S1_at--1121--9231Chr04:31829151..31829175 (25 bp)
TCCTTCTCTACTTATATGCTTCTCA
LOC_Os04g53770
OsAffx.14399.1.S1_at--786--4311Chr04:31829152..31829176 (25 bp)
CCTTCTCTACTTATATGCTTCTCAT
LOC_Os04g53770
Target Sequence 
AAGTTGCTTTTATTCCTTCTCTACTTATATGCTTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis