Browse Element(s) Details


OsAffx.14401.1.S1_at

Description tigr:9632.m05239
TID=OsAffx.14401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5394011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53890OsAffx.447.1.S1_at3/114+31894000..31898550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53890Os.52609.1.S1_at1/114+31894000..31898550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53890OsAffx.22947.2.S1_x_at1/114+31894000..31898550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53900Os.24831.4.S1_x_at7/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53900Os.24831.1.S1_x_at4/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53900Os.24831.3.S1_x_at4/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53900Os.24831.3.S1_s_at1/114+31902952..31905665retrotransposon protein, putative, unclassified
LOC_Os04g53910NANA4+31909040..31909746retrotransposon protein, putative, unclassified
LOC_Os04g53920Os.35386.1.S1_at2/114+31912935..31916324NAD dependent epimerase/dehydratase family protein
LOC_Os04g53930Os.8593.1.S1_at11/114+31918769..31921931organic anion transporter, putative, expressed
LOC_Os04g53940OsAffx.14401.1.S1_at11/114+31922337..31922576hypothetical protein
LOC_Os04g53950Os.7566.1.S1_at11/114+31926616..31928467Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g53960NANA4+31932266..31933038retrotransposon protein, putative, unclassified
LOC_Os04g53970OsAffx.26593.1.S1_at10/114+31933786..31936082hypothetical protein
LOC_Os04g53980Os.20602.2.S1_x_at11/114+31944431..31946611hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14401.1.S1_at--1040--2671Chr04:31922506..31922530 (25 bp)
AAGCTGGACATGTCGTTGCTTCCAT
LOC_Os04g53940
OsAffx.14401.1.S1_at--1104--8511Chr04:31922502..31922526 (25 bp)
TGGACATGTCGTTGCTTCCATTTCT
LOC_Os04g53940
OsAffx.14401.1.S1_at--364--9011Chr04:31922478..31922502 (25 bp)
TGAATTCCTTCAGATGGCCACTTGC
LOC_Os04g53940
OsAffx.14401.1.S1_at--52--3171Chr04:31922476..31922500 (25 bp)
AATTCCTTCAGATGGCCACTTGCGT
LOC_Os04g53940
OsAffx.14401.1.S1_at--512--10531Chr04:31922470..31922494 (25 bp)
TTCAGATGGCCACTTGCGTCTCAAG
LOC_Os04g53940
OsAffx.14401.1.S1_at--1146--1311Chr04:31922467..31922491 (25 bp)
AGATGGCCACTTGCGTCTCAAGCGG
LOC_Os04g53940
OsAffx.14401.1.S1_at--181--2071Chr04:31922459..31922483 (25 bp)
ACTTGCGTCTCAAGCGGTCACGCAT
LOC_Os04g53940
OsAffx.14401.1.S1_at--701--7151Chr04:31922453..31922477 (25 bp)
GTCTCAAGCGGTCACGCATTTCGCA
LOC_Os04g53940
OsAffx.14401.1.S1_at--337--9691Chr04:31922442..31922466 (25 bp)
TCACGCATTTCGCATCGGCATGGAA
LOC_Os04g53940
OsAffx.14401.1.S1_at--1094--4111Chr04:31922439..31922463 (25 bp)
CGCATTTCGCATCGGCATGGAAGGT
LOC_Os04g53940
OsAffx.14401.1.S1_at--628--10291Chr04:31922435..31922459 (25 bp)
TTTCGCATCGGCATGGAAGGTAGAA
LOC_Os04g53940
Target Sequence 
AAGCTGGACATGTCGTTGCTTCCATTTCTGAATTCCTTCAGATGGCCACTTGCGTCTCAAGCGGTCACGCATTTCGCATC
GGCATGGAAGGTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis