Browse Element(s) Details


OsAffx.14433.1.S1_at

Description tigr:9632.m05474
TID=OsAffx.14433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5619011/11hypothetical protein
LOC_Os06g444001/11hypothetical protein
LOC_Os12g064001/11hypothetical protein
LOC_Os05g190601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g331601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56170Os.52576.1.S1_at11/114+33269440..33273790LIGULELESS1 protein, putative, expressed
LOC_Os04g56180Os.57372.1.S1_at11/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56180Os.50838.1.A1_at6/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56190OsAffx.14433.1.S1_at11/114+33292622..33293447hypothetical protein
LOC_Os04g56200OsAffx.26629.1.S1_at11/114+33296749..33297386hypothetical protein
LOC_Os04g56210Os.25054.1.S1_at11/114+33298158..33300981Farnesyl pyrophosphate synthetase 1, mitochondrial precursor, putative, expressed
LOC_Os04g56220OsAffx.26630.1.S1_at10/114+33302307..33303570hypothetical protein
LOC_Os04g56220OsAffx.22651.3.A1_x_at1/114+33302307..33303570hypothetical protein
LOC_Os04g56230Os.22651.1.S1_at10/114+33305663..33309387Farnesyl pyrophosphate synthetase 2, putative, expressed
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56250Os.49955.1.A1_at11/114+33315321..33316613F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14433.1.S1_at--950--2151Chr04:33292967..33292991 (25 bp)
ACAGCGCTGCTGAATCGATGCCACG
LOC_Os04g56190
OsAffx.14433.1.S1_at--481--10595Chr04:33292993..33293079 (25 bp)
TTCTGGAGGACCCTTCGCGTGCCAG
LOC_Os04g56190
OsAffx.14433.1.S1_at--385--10011Chr04:33293113..33293137 (25 bp)
TAGAAGAGCGCCTGGTACGCCGAAC
LOC_Os04g56190
OsAffx.14433.1.S1_at--473--9951Chr04:33293128..33293152 (25 bp)
TACGCCGAACGCACCGAGTAGCATT
LOC_Os04g56190
OsAffx.14433.1.S1_at--202--6091Chr04:33293143..33293167 (25 bp)
GAGTAGCATTGGTCACTCGTCCAGC
LOC_Os04g56190
OsAffx.14433.1.S1_at--882--7091Chr04:33293154..33293178 (25 bp)
GTCACTCGTCCAGCGCTAAACAAGA
LOC_Os04g56190
OsAffx.14433.1.S1_at--138--5771Chr04:33293177..33293201 (25 bp)
GACGATCACCGACACCCGGCGAAAG
LOC_Os04g56190
OsAffx.14433.1.S1_at--594--571Chr04:33293281..33293305 (25 bp)
ATCCAGGAATTGTTCGCAGGCCAGA
LOC_Os04g56190
OsAffx.14433.1.S1_at--71--5211Chr04:33293307..33293331 (25 bp)
GCAATTGTGCGCGAACCTCTAAGCC
LOC_Os04g56190
OsAffx.14433.1.S1_at--718--10411Chr04:33293369..33293393 (25 bp)
TTATACTTATACCATGGCCCACATG
LOC_Os04g56190
OsAffx.14433.1.S1_at--51--771Chr04:33293391..33293415 (25 bp)
ATGTCAGTCGCAGTTCTGCCAATCA
LOC_Os04g56190
Target Sequence 
ACAGCGCTGCTGAATCGATGCCACGCTTCTGGAGGACCCTTCGCGTGCCAGAGAAGATCAGCACATGCAAAAGAGTGCTG
GCCATAGAAGAGCGCCTGGTACGCCGAACGCACCGAGTAGCATTGGTCACTCGTCCAGCGCTAAACAAGACGATCACCGA
CACCCGGCGAAAGCTGAATGTGAAGCACCGCATCCTAAACAAGGAGAAACTGGGAGATGATTGGGACATTGAGGGCGCCG
CGGATGTCAGAAATCCAGGAATTGTTCGCAGGCCAGAAGCAATTGTGCGCGAACCTCTAAGCCGCAGGGGCACAGCGAAG
ACATGTCAAACACTCATAACTTATACTTATACCATGGCCCACATGTCAGTCGCAGTTCTGCCAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis