Browse Element(s) Details


OsAffx.14521.1.S1_at

Description tigr:9633.m00229
TID=OsAffx.14521.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0310011/11HECT-domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03060Os.54003.1.S1_at11/115+1173107..1177239expressed protein
LOC_Os05g03070OsAffx.14519.1.S1_s_at11/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03070OsAffx.14519.1.S1_at10/115+1177311..1179073phosphate translocator, putative, expressed
LOC_Os05g03080OsAffx.26706.1.S1_x_at11/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.1.S1_at9/115+1182668..1191892hypothetical protein
LOC_Os05g03080OsAffx.26706.3.S1_x_at7/115+1182668..1191892hypothetical protein
LOC_Os05g03090OsAffx.28514.4.S1_s_at11/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03090OsAffx.28514.2.S1_x_at10/115+1192203..1200004transposon protein, putative, unclassified
LOC_Os05g03100OsAffx.14521.1.S1_at11/115+1200884..1207700HECT-domain family protein, expressed
LOC_Os05g03110OsAffx.14522.1.S1_at11/115+1209039..1210523PWWP domain containing protein, expressed
LOC_Os05g03120Os.51828.1.S1_at11/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120Os.51828.2.S1_x_at6/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03120OsAffx.19113.1.A1_at1/115+1218325..1223346retrotransposon protein, putative, unclassified, expressed
LOC_Os05g03130OsAffx.14523.1.S1_s_at11/115+1224313..1225030expressed protein
LOC_Os05g03140Os.35209.1.S1_s_at11/115+1232628..1236833senescence-associated family protein, putative, expressed
LOC_Os05g03140Os.53955.1.S1_at11/115+1232628..1236833senescence-associated family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016567biological_processprotein ubiquitination
GO:0042023biological_processDNA endoreduplication
GO:0000151cellular_componentubiquitin ligase complex
GO:0005622cellular_componentintracellular
GO:0005739cellular_componentmitochondrion
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14521.1.S1_at--129--7991Chr05:1204465..1204489 (25 bp)
GGATGAACTGCCAAGTACTTCTACT
LOC_Os05g03100
OsAffx.14521.1.S1_at--171--2271Chr05:1204561..1204585 (25 bp)
AAATCTCAGGAATTGCCAGGACTTG
LOC_Os05g03100
OsAffx.14521.1.S1_at--908--4751Chr05:1204615..1204639 (25 bp)
GCTGCAGAAGTTCACGCACTTGGCT
LOC_Os05g03100
OsAffx.14521.1.S1_at--595--2071Chr05:1204632..1204656 (25 bp)
ACTTGGCTCTCAGCGTGGACAATGA
LOC_Os05g03100
OsAffx.14521.1.S1_at--533--791Chr05:1204710..1204734 (25 bp)
ATGTGTGGTATGACAGTTTCCCTGT
LOC_Os05g03100
OsAffx.14521.1.S1_at--34--10651Chr05:1204727..1204751 (25 bp)
TTCCCTGTAATCCTGGCTGATGAAC
LOC_Os05g03100
OsAffx.14521.1.S1_at--351--5931Chr05:1204765..1204789 (25 bp)
GAGCACCATGATTCCTCTGAGGGAT
LOC_Os05g03100
OsAffx.14521.1.S1_at--909--2231Chr05:1204823..1204847 (25 bp)
AAATTTTCGAGATCAGCCAGGGAGG
LOC_Os05g03100
OsAffx.14521.1.S1_at--815--10111Chr05:1204862..1204886 (25 bp)
TATGGTGGAGTTCTCCCTGTTGATC
LOC_Os05g03100
OsAffx.14521.1.S1_at--975--8811Chr05:1204879..1204903 (25 bp)
TGTTGATCTTTCTTCGACACCTGAA
LOC_Os05g03100
OsAffx.14521.1.S1_at--310--7791Chr05:1204915..1204939 (25 bp)
GGTCCTGTTGCCTGAGATCTGTAAA
LOC_Os05g03100
Target Sequence 
GGATGAACTGCCAAGTACTTCTACTTTTGAGTTTGTGCAGAGTGGATCTATCAAACATTTGGCAGGTTATCTTTCCAATG
GGACATACTTTAATTCAAATCTCAGGAATTGCCAGGACTTGATAGGGGAGCTTAAGGAGGTGAAAATCCGGCTGCAGAAG
TTCACGCACTTGGCTCTCAGCGTGGACAATGAAAGCTCGGTGAAGCCACTTGAGATTTTGGTGGAGAAACTGATAGATGC
GTTGCATGTGTGGTATGACAGTTTCCCTGTAATCCTGGCTGATGAACAGTGCACACGTGAGAGCACCATGATTCCTCTGA
GGGATTCAGGAACTGAGGAACCAATGTCACTATATATAAAATTTTCGAGATCAGCCAGGGAGGAGGAGTTGGAGGATTAT
GGTGGAGTTCTCCCTGTTGATCTTTCTTCGACACCTGAATCCATTGAAGAGGTCCTGTTGCCTGAGATCTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis