Browse Element(s) Details


OsAffx.14572.1.S1_at

Description tigr:9633.m00603
TID=OsAffx.14572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0680010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06760Os.6307.1.S1_at11/115+3509490..3512896macrophage erythroblast attacher, putative, expressed
LOC_Os05g06770Os.37856.1.S1_at11/115+3513361..3514176ubiquitin, putative, expressed
LOC_Os05g06780Os.12266.1.S1_at11/115+3517583..3518969protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os05g06790OsAffx.26765.1.S1_s_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06790OsAffx.26765.1.S1_at11/115+3524374..3527965hypothetical protein
LOC_Os05g06800OsAffx.14572.1.S1_at10/115+3537069..3538126hypothetical protein
LOC_Os05g06814OsAffx.26765.1.S1_s_at11/115+3539045..3549382expressed protein
LOC_Os05g06814Os.9920.1.S1_at11/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.14573.1.S1_at7/115+3539045..3549382expressed protein
LOC_Os05g06814OsAffx.26765.1.S1_at3/115+3539045..3549382expressed protein
LOC_Os05g06830OsAffx.14574.1.S1_at10/115+3555866..3557448hypothetical protein
LOC_Os05g06830OsAffx.6962.1.S1_at1/115+3555866..3557448hypothetical protein
LOC_Os05g06840Os.53549.1.S1_at1/115+3558632..3563241DNA polymerase epsilon subunit B family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14572.1.S1_at--181--5711Chr05:3537205..3537229 (25 bp)
GACTATGTGGCATGGAACTTCACAA
LOC_Os05g06800
OsAffx.14572.1.S1_at--840--9651Chr05:3537224..3537248 (25 bp)
TCACAAAGTCTGGAGTTTTTTCGGT
LOC_Os05g06800
OsAffx.14572.1.S1_at--822--9431NONE
TCGGTTATCGGGTCAGGAGAATCAT
NONE
OsAffx.14572.1.S1_at--127--71Chr05:3537639..3537663 (25 bp)
ATTGCAGGCTTATTTGTTACCCTTT
LOC_Os05g06800
OsAffx.14572.1.S1_at--85--6771Chr05:3537654..3537678 (25 bp)
GTTACCCTTTATAATCTGTGGTCTG
LOC_Os05g06800
OsAffx.14572.1.S1_at--117--491Chr05:3537667..3537691 (25 bp)
ATCTGTGGTCTGTTCGTAATATTGA
LOC_Os05g06800
OsAffx.14572.1.S1_at--382--231Chr05:3537685..3537709 (25 bp)
ATATTGATAGTCGTTATGCAGTGGC
LOC_Os05g06800
OsAffx.14572.1.S1_at--803--10111Chr05:3537699..3537723 (25 bp)
TATGCAGTGGCACCAGAGAATCCAA
LOC_Os05g06800
OsAffx.14572.1.S1_at--536--8251Chr05:3537707..3537731 (25 bp)
GGCACCAGAGAATCCAACTAATGTT
LOC_Os05g06800
OsAffx.14572.1.S1_at--626--2731Chr05:3537737..3537761 (25 bp)
AAGAATTGCCTATCAGCTGGAGGAA
LOC_Os05g06800
OsAffx.14572.1.S1_at--984--5271Chr05:3537759..3537783 (25 bp)
GAATGGGCCAATTTACATGAACGGA
LOC_Os05g06800
Target Sequence 
GACTATGTGGCATGGAACTTCACAAAGTCTGGAGTTTTTTCGGTTATCGGGTCAGGAGAATCATATAATTGCAGGCTTAT
TTGTTACCCTTTATAATCTGTGGTCTGTTCGTAATATTGATAGTCGTTATGCAGTGGCACCAGAGAATCCAACTAATGTT
GCAAAAAGAATTGCCTATCAGCTGGAGGAATGGGCCAATTTACATGAACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis