Browse Element(s) Details


OsAffx.14590.1.S1_x_at

Description tigr:9633.m00740
TID=OsAffx.14590.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g082408/11hypothetical protein
LOC_Os04g430905/11expressed protein
LOC_Os12g171401/11NBS-LRR disease resistance protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08210Os.54523.1.S1_at6/115+4450620..4451946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08220OsAffx.26189.1.A1_s_at7/115+4452354..4454549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08230OsAffx.26784.1.S1_at11/115+4456563..4461030hypothetical protein
LOC_Os05g08240Os.56053.1.S1_at9/115+4474335..4476358hypothetical protein
LOC_Os05g08240OsAffx.14590.1.S1_x_at8/115+4474335..4476358hypothetical protein
LOC_Os05g08250NANA5+4479053..4481635retrotransposon protein, putative, unclassified
LOC_Os05g08260NANA5+4483194..4484342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g08270Os.24831.1.S1_x_at7/115+4486758..4489404retrotransposon protein, putative, unclassified
LOC_Os05g08270Os.24831.3.S1_x_at6/115+4486758..4489404retrotransposon protein, putative, unclassified
LOC_Os05g08270Os.24831.4.S1_x_at3/115+4486758..4489404retrotransposon protein, putative, unclassified
LOC_Os05g08270Os.24831.3.S1_s_at1/115+4486758..4489404retrotransposon protein, putative, unclassified
LOC_Os05g08280OsAffx.22850.1.S1_x_at2/115+4494710..4497071retrotransposon protein, putative, unclassified
LOC_Os05g08280OsAffx.30486.1.S1_at1/115+4494710..4497071retrotransposon protein, putative, unclassified
LOC_Os05g08280OsAffx.11259.1.S1_at1/115+4494710..4497071retrotransposon protein, putative, unclassified
LOC_Os05g08290NANA5+4499414..4506161retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14590.1.S1_x_at--681--10851Chr04:25299327..25299351 (25 bp)
TTGGATGCGGATGAAACTGATGAAA
LOC_Os04g43090
OsAffx.14590.1.S1_x_at--386--6471Chr04:25299296..25299320 (25 bp)
GATAAGCGAGCAACCTTCACAACTG
LOC_Os04g43090
OsAffx.14590.1.S1_x_at--594--5952Chr12:9806699..9806722 (24 bp)
GAGCAACCTTCACAACTGGATGGAA
LOC_Os12g17140
OsAffx.14590.1.S1_x_at--1098--6233Chr05:4475271..4475295 (25 bp)
GATGGAATGCTTTGGTTGGAGCCAA
LOC_Os05g08240
OsAffx.14590.1.S1_x_at--970--7893Chr05:4475258..4475282 (25 bp)
GGTTGGAGCCAATCTTTTCGAGCAA
LOC_Os05g08240
OsAffx.14590.1.S1_x_at--12--173Chr05:4474880..4474961 (25 bp)
ATTTAAATTTGCTGCTTGAGATCAA
LOC_Os05g08240
OsAffx.14590.1.S1_x_at--501--10753Chr05:4474865..4474887 (23 bp)
TTGAGATCAAACTTAGACCAACAAG
LOC_Os05g08240
OsAffx.14590.1.S1_x_at--1060--5833Chr05:4474850..4474874 (25 bp)
GACCAACAAGATTCAAGTACTTACT
LOC_Os05g08240
OsAffx.14590.1.S1_x_at--415--1133Chr05:4474565..4474589 (25 bp)
AGTCCACACCAGATGGTGGAAAAGA
LOC_Os05g08240
OsAffx.14590.1.S1_x_at--282--8613Chr05:4474552..4474576 (25 bp)
TGGTGGAAAAGATGCCGGAGTCTTC
LOC_Os05g08240
OsAffx.14590.1.S1_x_at--525--8813Chr05:4474485..4474509 (25 bp)
TGTTGATGCGCCTGCGACGGCGGAT
LOC_Os05g08240
Target Sequence 
TTGGATGCGGATGAAACTGATGAAATTCAAGGATAAGCGAGCAACCTTCACAACTGGATGGAATGCTTTGGTTGGAGCCA
ATCTTTTCGAGCAANNNGNNGNNNGNNNNTTNCNNNNNNCTNAAGTNNNNNNTTTGCCTGAANTTATTGCTCCTCTTGCT
GGAATTANTGCTACAAATTTAAATTTGCTGCTTGAGATCAAACTTAGACCAACAAGATTCAAGTACTTACTTTATGAAAG
TTGTACAAGATACAAACAACAATGGTTGAAACAANTTATGCACACGGCATACAANAGTCCACACCAGATGGTGGAAAAGA
TGCCGGAGTCTTCGGGGTGGCTACGACGGNGGATGGGACGGGGTGGAGGCGGCGATGTTGATGCGCCTGCGACGGCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14590.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis