Browse Element(s) Details


OsAffx.14604.1.S1_at

Description tigr:9633.m00799
TID=OsAffx.14604.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AI996342 product-related.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g089508/11hypoxanthine phosphoribosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08900Os.6152.1.S1_at11/115+4903232..4906195expressed protein
LOC_Os05g08900Os.6152.1.S2_at5/115+4903232..4906195expressed protein
LOC_Os05g08900Os.22994.1.S1_at2/115+4903232..4906195expressed protein
LOC_Os05g08910OsAffx.4280.2.S1_at11/115+4912587..4913066expressed protein
LOC_Os05g08920NANA5+4914982..4915467late embryogenesis abundant protein, putative, expressed
LOC_Os05g08930Os.53159.1.S1_s_at11/115+4916342..4918945chloroplast lumen common family protein, putative, expressed
LOC_Os05g08940NANA5+4920612..4924553transposon protein, putative, Mariner sub-class
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08960Os.12803.1.S1_s_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.46302.1.S1_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.12803.1.S1_at7/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.54503.1.A1_at5/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.5717.1.S1_at1/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08970Os.54219.1.S1_at11/115+4943452..4949049Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os05g08980Os.10806.1.S1_at11/115+4949582..4954534expressed protein
LOC_Os05g08990Os.12172.1.S1_at11/115+4954769..4959839Glutaminyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009116biological_processnucleoside metabolism
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14604.1.S1_at--752--531Chr05:4929607..4929631 (25 bp)
ATCGCCGCCCGGGTGTCGGAGGTGG
LOC_Os05g08950
OsAffx.14604.1.S1_at--1010--3331Chr05:4929401..4929425 (25 bp)
CACCTCCGACCTCAAAGTCGACGTC
LOC_Os05g08950
OsAffx.14604.1.S1_at--352--2731Chr05:4929037..4929394 (25 bp)
AAGCACGTCGTGGTGATTCTTGTAT
LOC_Os05g08950
OsAffx.14604.1.S1_at--1094--1491NONE
AGCACGTCGTGGTGATTCTTGTATC
NONE
OsAffx.14604.1.S1_at--100--5111NONE
GCACGTCGTGGTGATTCTTGTATCA
NONE
OsAffx.14604.1.S1_at--435--3351NONE
CACGTCGTGGTGATTCTTGTATCAA
NONE
OsAffx.14604.1.S1_at--118--1911Chr05:4929033..4929390 (25 bp)
ACGTCGTGGTGATTCTTGTATCAAC
LOC_Os05g08950
OsAffx.14604.1.S1_at--124--7191Chr05:4929031..4929388 (25 bp)
GTCGTGGTGATTCTTGTATCAACTA
LOC_Os05g08950
OsAffx.14604.1.S1_at--694--3991Chr05:4929029..4929386 (25 bp)
CGTGGTGATTCTTGTATCAACTAGT
LOC_Os05g08950
OsAffx.14604.1.S1_at--653--7751Chr05:4929026..4929047 (22 bp)
GGTGATTCTTGTATCAACTAGTGGA
LOC_Os05g08950
OsAffx.14604.1.S1_at--421--371Chr05:4929014..4929038 (25 bp)
ATCAACTAGTGGATACCTCGCGCAA
LOC_Os05g08950
Target Sequence 
ATCGCCGCCCGGGTGTCGGAGGTGGCCGCCGAGCTCGCCGCCGACCTCCGCGCCCTGCGCGAGCCCGCCGTCGTCGTCGG
CGTCGCCACGGGGGCGTTCCTCTTCCTCGCCGACCTGGTCCGCCGCGTCGACGCGCCGCTCGCCGTGGACCTCGTGCGCG
CCGAGTCGTACGGCGACGGCACCGAGTCCAGCGGCCGGCCGCGGATCACCTCCGACCTCAAAGTCGACGTCGCCGGGAAG
CACGTCGTGGTGATTCTTGTATCAACTAGTGGATACCTCGCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis