Browse Element(s) Details


OsAffx.14613.1.S1_at

Description tigr:9633.m00865
TID=OsAffx.14613.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0954011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09520OsAffx.26803.1.S1_at11/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09520OsAffx.26803.1.S1_x_at11/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09520Os.30881.3.S1_x_at1/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09530OsAffx.26804.1.S1_at11/115+5367805..5369809hypothetical protein
LOC_Os05g09540OsAffx.14613.1.S1_at11/115+5370872..5371546hypothetical protein
LOC_Os05g09550Os.148.1.S1_at4/115+5373736..5377429Der1-like family protein, expressed
LOC_Os05g09560OsAffx.14614.1.S1_at11/115+5380459..5382051hypothetical protein
LOC_Os05g09560Os.50120.1.S1_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09560OsAffx.16028.1.S1_x_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09570OsAffx.29789.3.S1_x_at11/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.29789.1.S1_x_at6/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.31885.2.S1_x_at2/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09580Os.6629.1.S1_at11/115+5394193..5395440expressed protein
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14613.1.S1_at--163--7731Chr05:5371409..5371433 (25 bp)
GGTGGCCAAGCAAATCGTCGTCCGC
LOC_Os05g09540
OsAffx.14613.1.S1_at--40--6191Chr05:5371222..5371246 (25 bp)
GAGGACGAGCTATGCTCCTTCGCCA
LOC_Os05g09540
OsAffx.14613.1.S1_at--786--9411Chr05:5371152..5371176 (25 bp)
TCGTCGACGTGCGATACCTTGGCGT
LOC_Os05g09540
OsAffx.14613.1.S1_at--277--1911Chr05:5371146..5371170 (25 bp)
ACGTGCGATACCTTGGCGTGTACGA
LOC_Os05g09540
OsAffx.14613.1.S1_at--70--6471Chr05:5371140..5371164 (25 bp)
GATACCTTGGCGTGTACGACGAACG
LOC_Os05g09540
OsAffx.14613.1.S1_at--197--10811Chr05:5371134..5371158 (25 bp)
TTGGCGTGTACGACGAACGCCCGTC
LOC_Os05g09540
OsAffx.14613.1.S1_at--279--2611Chr05:5371119..5371143 (25 bp)
AACGCCCGTCCACGCAAGAATGGCT
LOC_Os05g09540
OsAffx.14613.1.S1_at--8--7351Chr05:5371090..5371114 (25 bp)
GTGCAGCTGTACCTGCCACCGGCGA
LOC_Os05g09540
OsAffx.14613.1.S1_at--69--9491Chr05:5371032..5371056 (25 bp)
TCTGCCCGAGGCACACCGGAGCGGA
LOC_Os05g09540
OsAffx.14613.1.S1_at--8--10511Chr05:5370973..5370997 (25 bp)
TTCAAGGTGGGCGACACGCTGGCCA
LOC_Os05g09540
OsAffx.14613.1.S1_at--558--4551Chr05:5370927..5370951 (25 bp)
GCGCCGTGCACCAAGAATGCCTGCG
LOC_Os05g09540
Target Sequence 
GGTGGCCAAGCAAATCGTCGTCCGCCTCGGCATCCACCCTCCTGCCGGCAGCGGCGCCGACGCCCACGCCGTCGTCGACC
TGCGCTTCGCCCTGCAGGAGCCCACGCCGGCCGCGTCCGTCCCCTGGCGCTGGCTCGCCTTCTCACTCTGCCGCTTCCTC
GACCTCCCCGCCGACGGCAGCCGCCTCGAGGACGAGCTATGCTCCTTCGCCACCGACGTCGCCGGCGATGGCGCCGGCGG
CGCACTCCACCTCCTCCTCGTCGACGTGCGATACCTTGGCGTGTACGACGAACGCCCGTCCACGCAAGAATGGCTGCCGG
TGCAGCTGTACCTGCCACCGGCGACCGACGACGACGGCGCGGTCGTCGTGCTGCCGCTCTGCCCGAGGCACACCGGAGCG
GAGGCCGAGCGGTGGTGCCACGCCTGCCTCGGCGAGTTCAAGGTGGGCGACACGCTGGCCACGCCGGCGTGCTGCCGCCG
CCGCGCCGTGCACCAAGAATGCCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis