Browse Element(s) Details


OsAffx.14835.1.S1_at

Description tigr:9633.m02351
TID=OsAffx.14835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2606011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26040OsAffx.4433.1.S1_at10/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.27020.1.S1_x_at2/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.16356.1.S1_at1/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26049OsAffx.27019.1.S1_at11/115+15080388..15081350hypothetical protein
LOC_Os05g26060OsAffx.14835.1.S1_at11/115+15083568..15084648retrotransposon protein, putative, unclassified
LOC_Os05g26070Os.20593.1.S1_x_at11/115+15086368..15088379expressed protein
LOC_Os05g26070Os.20593.2.S1_at7/115+15086368..15088379expressed protein
LOC_Os05g26070Os.5199.2.S1_x_at2/115+15086368..15088379expressed protein
LOC_Os05g26080OsAffx.9860.1.S1_x_at1/115+15091764..15092511transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26090Os.46306.1.S1_x_at1/115+15093335..15094951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26100Os.14491.2.S1_x_at3/115+15098259..15101825transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26100Os.47463.1.S1_x_at2/115+15098259..15101825transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26110OsAffx.27020.1.S1_x_at11/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110OsAffx.15837.1.S1_at7/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110Os.18826.1.S1_at1/115+15103420..15112564transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14835.1.S1_at--229--6171Chr05:15084076..15084100 (25 bp)
GAGGATTGCCCTTATGGCGAGCTGC
LOC_Os05g26060
OsAffx.14835.1.S1_at--850--3971Chr05:15084160..15084184 (25 bp)
CGGTGCCTCACTGCTGATAATTTGG
LOC_Os05g26060
OsAffx.14835.1.S1_at--1157--6271Chr05:15084205..15084229 (25 bp)
GATGTTCTATGTCCTTTGTGTCAAC
LOC_Os05g26060
OsAffx.14835.1.S1_at--92--1311Chr05:15084234..15084258 (25 bp)
AGATGAAGACTGTCACCACCTGTTC
LOC_Os05g26060
OsAffx.14835.1.S1_at--981--6551Chr05:15084268..15084292 (25 bp)
GATTACACGGCTGCAGTCTGGAGGA
LOC_Os05g26060
OsAffx.14835.1.S1_at--380--5972Chr05:15084372..15084396 (25 bp)
GAGACGGCGTTTTCGGACGAGCTAC
LOC_Os05g26060
OsAffx.14835.1.S1_at--1047--8111Chr05:15084398..15084422 (25 bp)
GGACGGATTTCGATAGCGCTTTCAT
LOC_Os05g26060
OsAffx.14835.1.S1_at--465--4891Chr05:15084415..15084439 (25 bp)
GCTTTCATGCTAATCTGCTGGGTGA
LOC_Os05g26060
OsAffx.14835.1.S1_at--138--5891Chr05:15084448..15084472 (25 bp)
GAGCGCAATGCCAGGATTTTTCAGA
LOC_Os05g26060
OsAffx.14835.1.S1_at--349--7671Chr05:15084542..15084566 (25 bp)
GGGATTTTCTCCCAATTTGGCGAGT
LOC_Os05g26060
OsAffx.14835.1.S1_at--752--6091Chr05:15084563..15084587 (25 bp)
GAGTAATCACGTTTGTTGCTGCAGA
LOC_Os05g26060
Target Sequence 
GAGGATTGCCCTTATGGCGAGCTGCTGTGGCACTCCAGGGCACCGTCACGCGTCAGATTCTTCATGTGGATTGCGCTGAA
AGGCCGGTGCCTCACTGCTGATAATTTGGCCAAGCGAAACTGGCCGCATGATGTTCTATGTCCTTTGTGTCAACGAGAAG
ATGAAGACTGTCACCACCTGTTCGTGTCCTGCGATTACACGGCTGCAGTCTGGAGGAAAATGAGAGCATGGTGCAACGCA
AACTTCACCATACCGGCAGACAAGAACAGATCGTTGGCTGAATGGTGGCTGACTGAGAGACGGCGTTTTCGGACGAGCTA
CAGGACGGATTTCGATAGCGCTTTCATGCTAATCTGCTGGGTGATTTGGAAAGAGCGCAATGCCAGGATTTTTCAGAACG
TCTCTAGGACACATGAGTCGCTAGAGGATGACATCACAGAAGAGACAGCTGTTTGGAGAGTAGCCGGGGATTTTCTCCCA
ATTTGGCGAGTAATCACGTTTGTTGCTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis