Browse Element(s) Details


OsAffx.14941.1.S1_at

Description tigr:9630.m01881
TID=OsAffx.14941.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4311011/11hypothetical protein
LOC_Os08g2748011/11hypothetical protein
LOC_Os02g1970010/11hypothetical protein
LOC_Os03g5761010/11hypothetical protein
LOC_Os07g4542010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43070Os.1193.1.S1_at10/114+25281419..25283528Ammonium transporter 1, member 2, putative, expressed
LOC_Os04g43080OsAffx.14251.1.S1_at11/114+25293033..25293470hypothetical protein
LOC_Os04g43090Os.56053.1.S1_at10/114+25299162..25299693expressed protein
LOC_Os04g43090OsAffx.14590.1.S1_x_at5/114+25299162..25299693expressed protein
LOC_Os04g43100OsAffx.14941.4.S1_s_at11/114+25302021..25302888hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_at11/114+25304318..25305003hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_s_at8/114+25304318..25305003hypothetical protein
LOC_Os04g43120OsAffx.14252.1.S1_at10/114+25305794..25306305hypothetical protein
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g43160Os.16023.1.S1_at11/114+25329470..25331504expressed protein
LOC_Os04g43160Os.53881.1.S1_s_at1/114+25329470..25331504expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0009507cellular_componentchloroplast
GO:0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14941.1.S1_at--826--2715Chr04:25304346..25304370 (25 bp)
AAGCATATGGTAGGTGTTTTGCGCT
LOC_Os04g43110
OsAffx.14941.1.S1_at--420--3575Chr04:25304349..25304373 (25 bp)
CATATGGTAGGTGTTTTGCGCTGCC
LOC_Os04g43110
OsAffx.14941.1.S1_at--821--275Chr04:25304350..25304374 (25 bp)
ATATGGTAGGTGTTTTGCGCTGCCG
LOC_Os04g43110
OsAffx.14941.1.S1_at--88--10115Chr04:25304351..25304375 (25 bp)
TATGGTAGGTGTTTTGCGCTGCCGC
LOC_Os04g43110
OsAffx.14941.1.S1_at--121--835Chr04:25304352..25304376 (25 bp)
ATGGTAGGTGTTTTGCGCTGCCGCC
LOC_Os04g43110
OsAffx.14941.1.S1_at--255--8595Chr04:25304353..25304377 (25 bp)
TGGTAGGTGTTTTGCGCTGCCGCCA
LOC_Os04g43110
OsAffx.14941.1.S1_at--374--7435Chr04:25304359..25304383 (25 bp)
GTGTTTTGCGCTGCCGCCAGTTGGA
LOC_Os04g43110
OsAffx.14941.1.S1_at--15--10715Chr04:25304364..25304388 (25 bp)
TTGCGCTGCCGCCAGTTGGAAATAT
LOC_Os04g43110
OsAffx.14941.1.S1_at--1077--9155Chr04:25304365..25304388 (24 bp)
TGCGCTGCCGCCAGTTGGAAATATT
LOC_Os04g43110
OsAffx.14941.1.S1_at--1095--3433Chr04:25304376..25304479 (25 bp)
CAGTTGGAAATATTGGATGTGGTCA
LOC_Os04g43110
OsAffx.14941.1.S1_at--853--6614Chr04:25304378..25304481 (25 bp)
GTTGGAAATATTGGATGTGGTCATA
LOC_Os04g43110
Target Sequence 
AAGCATATGGTAGGTGTTTTGCGCTGCCGCCAGTTGGAAATATTGGATGTGGTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis