Browse Element(s) Details


OsAffx.15137.1.S1_at

Description tigr:9633.m04437
TID=OsAffx.15137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=B3 DNA binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4765011/11DNA-binding protein RAV1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47610Os.43567.1.S1_x_at4/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_at2/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.3.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47620OsAffx.27354.1.S1_at11/115+27202157..27203310hypothetical protein
LOC_Os05g47630Os.7968.1.S1_at4/115+27203909..27206342peptidyl-tRNA hydrolase family protein, expressed
LOC_Os05g47640Os.9175.1.S1_at11/115+27207287..27209237Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os05g47650OsAffx.15137.1.S1_at11/115+27219714..27221293DNA-binding protein RAV1, putative, expressed
LOC_Os05g47660OsAffx.15138.1.S1_at11/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_x_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.26910.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47670Os.20644.1.S1_at11/115+27234153..27237274Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g47680NANA5+27237302..27239600hypothetical protein
LOC_Os05g47690NANA5+27240420..27241809Reticulon family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15137.1.S1_at--1134--7051Chr05:27220615..27220639 (25 bp)
GTAAGAACGCGCAGCTCTTCATCGA
LOC_Os05g47650
OsAffx.15137.1.S1_at--668--9611Chr05:27220633..27220657 (25 bp)
TCATCGACTGCAAGGTCCGGGCAAA
LOC_Os05g47650
OsAffx.15137.1.S1_at--904--4491Chr05:27220725..27220749 (25 bp)
GCCGTGAAGGCTATCAGGCTGTTCG
LOC_Os05g47650
OsAffx.15137.1.S1_at--455--911Chr05:27220740..27220764 (25 bp)
AGGCTGTTCGGTGTCGACCTGCTCA
LOC_Os05g47650
OsAffx.15137.1.S1_at--1132--2771Chr05:27220812..27220836 (25 bp)
AAGAGCAAGAGAGCCATGGACGCCA
LOC_Os05g47650
OsAffx.15137.1.S1_at--16--8111Chr05:27220829..27220853 (25 bp)
GGACGCCATGGCTGAGTCACAAGCA
LOC_Os05g47650
OsAffx.15137.1.S1_at--455--6091Chr05:27220842..27220866 (25 bp)
GAGTCACAAGCACACGTGGTTTTTA
LOC_Os05g47650
OsAffx.15137.1.S1_at--723--291Chr05:27220878..27220902 (25 bp)
ATAGAGCTTGCGCTAACCTAGCTAG
LOC_Os05g47650
OsAffx.15137.1.S1_at--118--9791Chr05:27220891..27220915 (25 bp)
TAACCTAGCTAGCACGCTGATGCAG
LOC_Os05g47650
OsAffx.15137.1.S1_at--941--5091Chr05:27220902..27220926 (25 bp)
GCACGCTGATGCAGCTAGCGTTTTT
LOC_Os05g47650
OsAffx.15137.1.S1_at--261--4831Chr05:27220930..27220954 (25 bp)
GCTCATTCGCTTGCTTGCTTAATTA
LOC_Os05g47650
Target Sequence 
GTAAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCCGCCGCCGCCTTCCTCAGC
GCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGC
GCCGGAGCTGCAGGACGCCGGCGGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCAC
ACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCA
TTCGCTTGCTTGCTTAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis