Browse Element(s) Details


OsAffx.15171.1.S1_at

Description tigr:9633.m04681
TID=OsAffx.15171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4982011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49780Os.28038.1.S1_at10/115+28489163..28491882CCAAT-binding transcription factor subunit HAP3C, putative, expressed
LOC_Os05g49790OsAffx.4671.1.S1_x_at11/115+28494793..28495209expressed protein
LOC_Os05g49790OsAffx.4671.1.S1_at11/115+28494793..28495209expressed protein
LOC_Os05g49800Os.4761.1.S1_at11/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.46673.1.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49800Os.4767.2.S1_x_at1/115+28495967..28499343Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g49810OsAffx.4672.1.S1_at11/115+28502389..28505608Armadillo/beta-catenin-like repeat family protein
LOC_Os05g49820OsAffx.15171.1.S1_at11/115+28505944..28510533hypothetical protein
LOC_Os05g49820Os.47086.1.S1_at1/115+28505944..28510533hypothetical protein
LOC_Os05g49830OsAffx.27387.2.S1_at11/115+28514304..28515613Lipase family protein, expressed
LOC_Os05g49840Os.54760.1.S1_at9/115+28515675..28519994Lipase family protein, expressed
LOC_Os05g49850OsAffx.10048.1.S1_x_at1/115+28522656..28526918retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g49860OsAffx.10929.1.S1_x_at2/115+28528717..28529506Histone H2B, putative, expressed
LOC_Os05g49870NANA5+28530478..28533304retrotransposon protein, putative, unclassified
LOC_Os05g49880Os.11139.1.S1_at11/115+28534384..28538305Malate dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15171.1.S1_at--696--3931Chr05:28507584..28507608 (25 bp)
CGGCGTTCGGCTACCGTGATCTGAA
LOC_Os05g49820
OsAffx.15171.1.S1_at--1102--8351Chr05:28507544..28507568 (25 bp)
GGCGTCGTCGTTCTGTGATGATCCA
LOC_Os05g49820
OsAffx.15171.1.S1_at--82--1111Chr05:28507351..28507375 (25 bp)
AGTGTACAGCCTTGCGCGAGTGCGA
LOC_Os05g49820
OsAffx.15171.1.S1_at--369--6311Chr05:28507318..28507342 (25 bp)
GATGAACAGGTACCGCGGCTATCAC
LOC_Os05g49820
OsAffx.15171.1.S1_at--1089--4691Chr05:28507304..28507328 (25 bp)
GCGGCTATCACATCCCATGGGAATG
LOC_Os05g49820
OsAffx.15171.1.S1_at--803--6771Chr05:28507132..28507284 (25 bp)
GTTAGCCAGAACACGCACAAGGATG
LOC_Os05g49820
OsAffx.15171.1.S1_at--1083--5891Chr05:28506243..28506267 (25 bp)
GAGCTGATGCTTCAAGGTGTCCGAT
LOC_Os05g49820
OsAffx.15171.1.S1_at--235--1051Chr05:28506229..28506253 (25 bp)
AGGTGTCCGATTCGCCTTCAGAGTT
LOC_Os05g49820
OsAffx.15171.1.S1_at--750--10271Chr05:28506051..28506075 (25 bp)
TTTGCAGGTGGATTCGACGGTGACA
LOC_Os05g49820
OsAffx.15171.1.S1_at--385--5751Chr05:28506036..28506060 (25 bp)
GACGGTGACACGATGCGAGCATTTC
LOC_Os05g49820
OsAffx.15171.1.S1_at--49--9231Chr05:28505991..28506015 (25 bp)
TCCACGTTCCAATCGCAACGGGAAT
LOC_Os05g49820
Target Sequence 
CGGCGTTCGGCTACCGTGATCTGAAGAAGATCGAGGAGGAGGCGTCGTCGTTCTGTGATGATCCACGGCAGCCTTGCTCT
TCTGCCCTCAAGAAGATGCAGGCGCTGTTCGAGAAGTTGGAGCATGGAGTGTACAGCCTTGCGCGAGTGCGAGATGGCGC
GATGAACAGGTACCGCGGCTATCACATCCCATGGGAATGGATGCAGGACACAGGAATAGTTAGCCAGAACACGCACAAGG
ATGCGAAAAACATTAACACATATAAGACATACACTCGAGATAACAACAAAAAGAATTTGGGGATCAAACTCCAGTCAGTG
AAGTTAGCAATGAAATACCTGAGGAGGGTTTCCTCTGAGCTTGAGGCCATAAAAGATGGCCCTGACGAAGAGGAGCTGAT
GCTTCAAGGTGTCCGATTCGCCTTCAGAGTTCACCAGTTTGCAGGTGGATTCGACGGTGACACGATGCGAGCATTTCAGG
AGCTCAAGGAGAAGGCCTCCACGTTCCAATCGCAACGGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis