Browse Element(s) Details


OsAffx.15296.1.S1_at

Description tigr:9634.m00665
TID=OsAffx.15296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0733011/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07280OsAffx.27488.1.S1_at11/116+3488967..3489803Tubulin beta-1 chain, putative
LOC_Os06g07290NANA6+3493534..3499016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07300Os.22995.1.S1_at5/116+3503058..3507741Protein GOS9, putative
LOC_Os06g07300Os.11426.2.S1_x_at1/116+3503058..3507741Protein GOS9, putative
LOC_Os06g07320NANA6+3508676..3513721retrotransposon protein, putative, unclassified
LOC_Os06g07330OsAffx.15296.1.S1_at11/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07330OsAffx.4918.1.S1_at2/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07330OsAffx.4749.1.S1_x_at1/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07340OsAffx.27489.1.S1_at11/116+3531649..3532765hypothetical protein
LOC_Os06g07350Os.14314.1.S1_at11/116+3535684..3539224RNA recognition motif family protein, expressed
LOC_Os06g07360OsAffx.27490.1.S1_at11/116+3539813..3540835hypothetical protein
LOC_Os06g07360OsAffx.4222.1.A1_at1/116+3539813..3540835hypothetical protein
LOC_Os06g07370OsAffx.24046.2.S1_x_at11/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07370OsAffx.24046.7.S1_x_at4/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07370OsAffx.24046.3.S1_x_at1/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07370OsAffx.24046.5.S1_x_at1/116+3542442..3544712hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15296.1.S1_at--191--1371Chr06:3514702..3514726 (25 bp)
AGACCTCCAACATACTACTGGACGA
LOC_Os06g07330
OsAffx.15296.1.S1_at--1114--8091Chr06:3514683..3514707 (25 bp)
GGACGAGAACTATACCGCAAAGATA
LOC_Os06g07330
OsAffx.15296.1.S1_at--232--10851Chr06:3514651..3514675 (25 bp)
TTGGAGCCTCAATACTAGTGCCGAC
LOC_Os06g07330
OsAffx.15296.1.S1_at--358--10051Chr06:3514636..3514660 (25 bp)
TAGTGCCGACTGATGAGGCCCAGTT
LOC_Os06g07330
OsAffx.15296.1.S1_at--1156--8391Chr06:3514620..3514644 (25 bp)
GGCCCAGTTTGTCACCTTGGTGCAA
LOC_Os06g07330
OsAffx.15296.1.S1_at--386--8631Chr06:3514587..3514611 (25 bp)
TGGGTACCTAGATCCCGAGTACATG
LOC_Os06g07330
OsAffx.15296.1.S1_at--462--9091Chr06:3514501..3514525 (25 bp)
TGCTCACCGGCAAAATGGCCTTCAA
LOC_Os06g07330
OsAffx.15296.1.S1_at--371--991Chr06:3514354..3514378 (25 bp)
AGGAGGTTGCTGACCTCGCGAGCCA
LOC_Os06g07330
OsAffx.15296.1.S1_at--155--9351Chr06:3514339..3514363 (25 bp)
TCGCGAGCCAGTGCCTGGAGATGAT
LOC_Os06g07330
OsAffx.15296.1.S1_at--337--6031Chr06:3514291..3514315 (25 bp)
GAGATGTCGCCGACAAGCTTGGCCG
LOC_Os06g07330
OsAffx.15296.1.S1_at--253--7891Chr06:3514173..3514197 (25 bp)
GGTTAGCACCGGGAATTTCAGCATG
LOC_Os06g07330
Target Sequence 
AGACCTCCAACATACTACTGGACGAGAACTATACCGCAAAGATATCGGACTTTGGAGCCTCAATACTAGTGCCGACTGAT
GAGGCCCAGTTTGTCACCTTGGTGCAAGGAACCTGTGGGTACCTAGATCCCGAGTACATGCAGACGTGCCAATTGACAGA
TAAGAGCGATGTGTACAGCTTTGGCGTCGTTCTACTGGAGCTGCTCACCGGCAAAATGGCCTTCAACCTTGAAGGTCCTG
AAAATGAGAAGAGCCTTTCATTGAGCTTCTTGTGTGCCATGAAGGAGGGAAGACTCATGGACATTATAGATCATCACATT
CAGACTGATGAGAATGCTGGGGTGCTCGAGGAGGTTGCTGACCTCGCGAGCCAGTGCCTGGAGATGATCGGCGATAACCG
ACCGTCGATGAGAGATGTCGCCGACAAGCTTGGCCGGCTGAGGAAGGTCATGCAGCACCCATGGGCGCAGCATGACCCGG
AGGAGATGGAGAGCTTACTCGGGGAGTCGTCGGTGGCTGGTTTGGAGATGGTTAGCACCGGGAATTTCAGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis