Browse Element(s) Details


OsAffx.15620.1.S1_at

Description tigr:9634.m02586
TID=OsAffx.15620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2612011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26070OsAffx.22699.1.S1_x_at2/116+15256081..15259783retrotransposon protein, putative, unclassified
LOC_Os06g26080OsAffx.27825.1.S1_at11/116+15264745..15266402hypothetical protein
LOC_Os06g26090NANA6+15268949..15269674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26100OsAffx.278.1.S1_at2/116+15270078..15274065retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26110Os.27435.1.S1_x_at4/116+15274702..15276838hypothetical protein
LOC_Os06g26110Os.51856.1.S2_x_at1/116+15274702..15276838hypothetical protein
LOC_Os06g26110Os.51856.1.S2_at1/116+15274702..15276838hypothetical protein
LOC_Os06g26110Os.46334.1.S1_x_at1/116+15274702..15276838hypothetical protein
LOC_Os06g26120OsAffx.15620.1.S1_at11/116+15279892..15280654hypothetical protein
LOC_Os06g26130OsAffx.14839.1.S1_at1/116+15288366..15291158hypothetical protein
LOC_Os06g26130Os.31845.1.S1_x_at1/116+15288366..15291158hypothetical protein
LOC_Os06g26140NANA6+15293147..15294511hypothetical protein
LOC_Os06g26150OsAffx.22699.1.S1_x_at3/116+15295175..15301561retrotransposon protein, putative, unclassified
LOC_Os06g26150OsAffx.18275.1.S1_x_at2/116+15295175..15301561retrotransposon protein, putative, unclassified
LOC_Os06g26150OsAffx.13786.1.S1_x_at1/116+15295175..15301561retrotransposon protein, putative, unclassified
LOC_Os06g26160OsAffx.28610.2.S1_x_at11/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.2.S1_at10/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.1.S1_at6/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.1.S1_x_at4/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.3.S1_at3/116+15301894..15304365hypothetical protein
LOC_Os06g26160Os.4760.1.S1_at1/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.4.S1_x_at1/116+15301894..15304365hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15620.1.S1_at--1119--5291Chr06:15280264..15280623 (25 bp)
GAAGGCATGCACAAGGGTTAGAAAA
LOC_Os06g26120
OsAffx.15620.1.S1_at--422--6291Chr06:15280196..15280220 (25 bp)
GATGACCGTGGCTTATTGTCAAGGA
LOC_Os06g26120
OsAffx.15620.1.S1_at--967--1771Chr06:15280192..15280216 (25 bp)
ACCGTGGCTTATTGTCAAGGATGAC
LOC_Os06g26120
OsAffx.15620.1.S1_at--408--8731Chr06:15280180..15280204 (25 bp)
TGTCAAGGATGACGGTCGTCTCTCC
LOC_Os06g26120
OsAffx.15620.1.S1_at--1076--992Chr02:17548631..17549005 (25 bp)
AGGATGACGGTCGTCTCTCCCGCGG
NONE
OsAffx.15620.1.S1_at--305--4711Chr06:15280121..15280145 (25 bp)
GCTGGAGCTCTCTCCCTGGGTTTCT
LOC_Os06g26120
OsAffx.15620.1.S1_at--103--4191Chr06:15280108..15280132 (25 bp)
CCCTGGGTTTCTCCGGCGCTAGAGT
LOC_Os06g26120
OsAffx.15620.1.S1_at--868--2911Chr06:15280076..15280100 (25 bp)
AAGGAGAGGCGATACAACTGGGAGA
LOC_Os06g26120
OsAffx.15620.1.S1_at--1123--6151Chr06:15280047..15280066 (20 bp)
GAGGATCTCGGCGTTTTGAGCTGGA
LOC_Os06g26120
OsAffx.15620.1.S1_at--1157--5551Chr06:15279934..15279958 (25 bp)
GAAAGGTTTCACAGAGCTGGAGCAA
LOC_Os06g26120
OsAffx.15620.1.S1_at--411--1371Chr06:15279922..15279946 (25 bp)
AGAGCTGGAGCAAGCTCTAGTGGCT
LOC_Os06g26120
Target Sequence 
GAAGGCATGCACAAGGGTTAGAAAATGATTGGCATAGAGAGAAGATAATGGTTCAGGAAAAAGATGGGGATGACCGTGGC
TTATTGTCAAGGATGACGGTCGTCTCTCCCGCGGCCGGCGACGAAAGAAAGGTAAGAGGGAGAGCTGGAGCTCTCTCCCT
GGGTTTCTCCGGCGCTAGAGTGGAGAGGAAGGAGAGGCGATACAACTGGGAGAGGAGTAGAGGAGGATCTCGGCGTTTTG
AGCTGGAGCGGTGGAGGAAAGGTTTCACAGAGCTGGAGCAAGCTCTAGTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis