Browse Element(s) Details


OsAffx.15880.1.S1_at

Description tigr:9632.m03969
TID=OsAffx.15880.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4163011/11hypothetical protein
LOC_Os06g417207/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41580Os.51458.1.S1_at11/114+24448167..24451886expressed protein
LOC_Os04g41599Os.14491.2.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41599Os.47463.1.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41620Os.7991.1.S1_at11/114+24468615..24470213Endochitinase A precursor, putative, expressed
LOC_Os04g41620Os.36593.2.S1_x_at1/114+24468615..24470213Endochitinase A precursor, putative, expressed
LOC_Os04g41630OsAffx.15880.1.S1_at11/114+24472435..24473094hypothetical protein
LOC_Os04g41630OsAffx.15880.1.S1_s_at11/114+24472435..24473094hypothetical protein
LOC_Os04g41630OsAffx.31575.1.S1_x_at1/114+24472435..24473094hypothetical protein
LOC_Os04g41640NANA4+24473621..24474222Chitin recognition protein, expressed
LOC_Os04g41650OsAffx.7362.1.S1_x_at1/114+24477559..24478422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41660NANA4+24481120..24483194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41670OsAffx.23366.2.S1_s_at1/114+24485575..24489201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41670OsAffx.23366.1.S1_at1/114+24485575..24489201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41680Os.10166.1.S1_at11/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41680Os.51172.1.S1_x_at1/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41680Os.2692.1.S1_x_at1/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41690Os.41695.4.S1_x_at2/114+24493381..24497888transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15880.1.S1_at--870--7692Chr04:24472682..24472706 (25 bp)
GGGTCGTACGGCCATGCCTTTTTCT
LOC_Os04g41630
OsAffx.15880.1.S1_at--1103--9312Chr04:24472685..24472709 (25 bp)
TCGTACGGCCATGCCTTTTTCTTCT
LOC_Os04g41630
OsAffx.15880.1.S1_at--533--9932Chr04:24472688..24472712 (25 bp)
TACGGCCATGCCTTTTTCTTCTGCT
LOC_Os04g41630
OsAffx.15880.1.S1_at--701--3292Chr04:24472715..24472739 (25 bp)
CACAAGAGGCCGCTTTGCGCCATCT
LOC_Os04g41630
OsAffx.15880.1.S1_at--894--2792Chr04:24472718..24472742 (25 bp)
AAGAGGCCGCTTTGCGCCATCTCTG
LOC_Os04g41630
OsAffx.15880.1.S1_at--63--4532Chr04:24472723..24472747 (25 bp)
GCCGCTTTGCGCCATCTCTGCGTGG
LOC_Os04g41630
OsAffx.15880.1.S1_at--1037--10692Chr04:24472729..24472753 (25 bp)
TTGCGCCATCTCTGCGTGGCGGCCG
LOC_Os04g41630
OsAffx.15880.1.S1_at--337--3292Chr04:24472772..24472862 (25 bp)
CACACTCGGTCGTAGTTTGTTTGGA
LOC_Os04g41630
OsAffx.15880.1.S1_at--277--2172Chr04:24472773..24472863 (25 bp)
ACACTCGGTCGTAGTTTGTTTGGAT
LOC_Os04g41630
OsAffx.15880.1.S1_at--268--3332Chr04:24472774..24472864 (25 bp)
CACTCGGTCGTAGTTTGTTTGGATT
LOC_Os04g41630
OsAffx.15880.1.S1_at--822--3772Chr04:24472776..24472866 (25 bp)
CTCGGTCGTAGTTTGTTTGGATTGG
LOC_Os04g41630
Target Sequence 
GGGTCGTACGGCCATGCCTTTTTCTTCTGCTGGCACAAGAGGCCGCTTTGCGCCATCTCTGCGTGGCGGCCGGCGGCGGC
GCGCCGCCACCACACTCGGTCGTAGTTTGTTTGGATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis