Browse Element(s) Details


OsAffx.15902.1.S1_at

Description tigr:9634.m04152
TID=OsAffx.15902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4302010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43000OsAffx.15901.1.S1_at11/116+25831462..25836179hypothetical protein
LOC_Os06g43010NANA6+25851027..25851320hypothetical protein
LOC_Os06g43020OsAffx.15902.1.S1_at10/116+25856439..25862971expressed protein
LOC_Os06g43030Os.50002.1.S1_at11/116+25866750..25869522protein kinase, putative, expressed
LOC_Os06g43044OsAffx.15903.1.S1_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044OsAffx.15903.1.S1_s_at11/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50788.1.A1_at10/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.8847.1.S1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43044Os.50043.1.A1_at1/116+25869227..25875331GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g43060OsAffx.28071.1.S1_at11/116+25879284..25879841expressed protein
LOC_Os06g43070OsAffx.5087.1.S1_at11/116+25882988..25883281hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15902.1.S1_at--17--9571Chr06:25859532..25859556 (25 bp)
TCTTCACGTCTGTGCAGCTGTATGA
LOC_Os06g43020
OsAffx.15902.1.S1_at--64--10671Chr06:25859491..25859515 (25 bp)
TTCCGGTGGCAACAGACACACTCTG
LOC_Os06g43020
OsAffx.15902.1.S1_at--460--3311Chr06:25859337..25859499 (25 bp)
CACACTCTGAGACACGGACGGCGAA
LOC_Os06g43020
OsAffx.15902.1.S1_at--235--3951Chr06:25859323..25859347 (25 bp)
CGGACGGCGAATTTCTACATCTCTG
LOC_Os06g43020
OsAffx.15902.1.S1_at--105--2931Chr06:25859189..25859213 (25 bp)
AAGGAACCTCAAAAGCTGGATGGCA
LOC_Os06g43020
OsAffx.15902.1.S1_at--768--10351Chr06:25859156..25859180 (25 bp)
TTTATCGTGTGATGGCACTGTGCAT
LOC_Os06g43020
OsAffx.15902.1.S1_at--442--2171Chr06:25858445..25858469 (25 bp)
ACACTGCTAGTGTGATTGGAGTCCT
LOC_Os06g43020
OsAffx.15902.1.S1_at--304--8991Chr06:25858421..25858445 (25 bp)
TGAAGAAGCACCACGCCTACGACAT
LOC_Os06g43020
OsAffx.15902.1.S1_at--24--4271NONE
CCGGCTGCCAGTTCACGAGATATTA
NONE
OsAffx.15902.1.S1_at--878--7391Chr06:25856557..25856579 (23 bp)
GTGATGGTCGCCTGACGTGCTCTTA
LOC_Os06g43020
OsAffx.15902.1.S1_at--649--7311Chr06:25856541..25856565 (25 bp)
GTGCTCTTACTCTACATGTGACTTT
LOC_Os06g43020
Target Sequence 
TCTTCACGTCTGTGCAGCTGTATGAGCGCCGTGGATGCTGCTTCCGGTGGCAACAGACACACTCTGAGACACGGACGGCG
AATTTCTACATCTCTGACAGGAACACTGGAAAGAGGTTCTACGTGAGAGCTGGCGAGGGTGGCAAGATCACCTGGATGAT
TAAGCAGAAGACGGACAGCTTAGATGGCGAGAGGAAGGGAGCATCAAGGAACCTCAAAAGCTGGATGGCAAGCAATGATT
TATCGTGTGATGGCACTGTGCATGTCAAAGAAGGGTTCATCAGGGAAGGGGACACTGCTAGTGTGATTGGAGTCCTGAAG
AAGCACCACGCCTACGACATCGTCGACGCGCCGTCCGGCGTGGTAACCACCGGCTGCCAGTTCACGAGATATTACCATAT
ACTATCCAACACAGATGTTAGAATAGGTGTTGAATATACTAGTTCTATTTTGGTTATAGTTAGACTTGGGGTTGTAATAG
GTGATGGTCGCCTGACGTGCTCTTACTCTACATGTGACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis