Browse Element(s) Details


OsAffx.15942.1.S1_at

Description tigr:9634.m04451
TID=OsAffx.15942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT002285 At4g00060F6N15_10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4580011/11PAP/25A associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45740NANA6+27686302..27689021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45750NANA6+27689484..27692242retrotransposon protein, putative, unclassified
LOC_Os06g45760OsAffx.11259.1.S1_at1/116+27693865..27697529retrotransposon protein, putative, unclassified
LOC_Os06g45770OsAffx.30153.1.S1_at11/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45770OsAffx.30153.2.S1_x_at1/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45780OsAffx.5118.1.S1_x_at11/116+27703859..27704929hypothetical protein
LOC_Os06g45780Os.5212.2.S1_at6/116+27703859..27704929hypothetical protein
LOC_Os06g45780OsAffx.5136.1.S1_at3/116+27703859..27704929hypothetical protein
LOC_Os06g45790OsAffx.28123.1.S1_at11/116+27706148..27706591hypothetical protein
LOC_Os06g45800OsAffx.15942.1.S1_at11/116+27708822..27718177PAP/25A associated domain containing protein, expressed
LOC_Os06g45810Os.20602.2.S1_x_at11/116+27718971..27721151hAT family dimerisation domain containing protein
LOC_Os06g45820Os.9440.1.S1_a_at11/116+27723579..27727261Cell division protein ftsH homolog, putative, expressed
LOC_Os06g45830OsAffx.5119.1.S1_at11/116+27727573..27732665conserved oligomeric Golgi complex component, putative, expressed
LOC_Os06g45840Os.22374.1.S1_a_at10/116+27733727..27739380myb family transcription factor, putative, expressed
LOC_Os06g45850Os.16635.1.S1_at11/116+27742195..27746055OTU-like cysteine protease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15942.1.S1_at--918--10571Chr06:27711620..27711644 (25 bp)
TTCTCGTTCTGACAACTCTAGTTCA
LOC_Os06g45800
OsAffx.15942.1.S1_at--1061--331Chr06:27711520..27711544 (25 bp)
ATAAGTTTCAAATCACCATCCCACA
LOC_Os06g45800
OsAffx.15942.1.S1_at--59--8711Chr06:27710561..27710585 (25 bp)
TGTGCCTCTTGCCTTAATACTGAAG
LOC_Os06g45800
OsAffx.15942.1.S1_at--751--8311Chr06:27710528..27710552 (25 bp)
GGCTGACCGGAGTTTGGATCACCCA
LOC_Os06g45800
OsAffx.15942.1.S1_at--1147--7951Chr06:27710513..27710537 (25 bp)
GGATCACCCATATTCTGGTGGTCTA
LOC_Os06g45800
OsAffx.15942.1.S1_at--850--10491Chr06:27709958..27709982 (25 bp)
TTAATCGTTCGTTTTCTTCAGCATG
LOC_Os06g45800
OsAffx.15942.1.S1_at--141--691Chr06:27709936..27709960 (25 bp)
ATGAGCATCATCTTGGTCGGCCCAT
LOC_Os06g45800
OsAffx.15942.1.S1_at--436--3891Chr06:27709661..27709685 (25 bp)
CTGGGCAGCCTTTTGATGGATTTCC
LOC_Os06g45800
OsAffx.15942.1.S1_at--82--2551Chr06:27709232..27709256 (25 bp)
AACTGTTTCCGCATTCACCAATGTA
LOC_Os06g45800
OsAffx.15942.1.S1_at--427--4751Chr06:27708920..27708944 (25 bp)
GCTGATGCTTTTACTGTTCTAGAAA
LOC_Os06g45800
OsAffx.15942.1.S1_at--496--1771Chr06:27708861..27708885 (25 bp)
ACCTGTGTCATCATTCAACCTACTG
LOC_Os06g45800
Target Sequence 
TTCTCGTTCTGACAACTCTAGTTCAGAAGGTAGCAGCATGCCAATGTGTTCAAGAATAAACAAGGATGATGGCAATGTTG
TGCAGTCAATTCGTCTTGATATAAGTTTCAAATCACCATCCCACACAGGACTCCAGACAACTGAGTTGGTCTGTGAATTA
ACTCAGCAATTTCCTGCTGCTGTGCCTCTTGCCTTAATACTGAAGAAGTTTTTGGCTGACCGGAGTTTGGATCACCCATA
TTCTGGTGGTCTAAGTTCATATTGTTTGGTACTGTTAATCGTTCGTTTTCTTCAGCATGAGCATCATCTTGGTCGGCCCA
TTAACCAAAATCTGGGCAGCCTTTTGATGGATTTCCTATACTTTTTTGGCATTGATCCAATACACATTGATGATCCTCTT
TGCCCTGCCAATAATGTGGGCAGGAACTGTTTCCGCATTCACCAATGTATCAAGGCTTTTGCTGATGCTTTTACTGTTCT
AGAAAATGAGCTGCTGCAGTTCAGTGCAGAATGTTACACACCTGTGTCATCATTCAACCTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis