Browse Element(s) Details


OsAffx.16144.1.S1_at

Description tigr:9635.m00724
TID=OsAffx.16144.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0775011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed
LOC_Os07g07730OsAffx.5244.1.S1_at11/117+3885439..3885834hypothetical protein
LOC_Os07g07740OsAffx.16143.1.S1_at10/117+3889016..3890289hypothetical protein
LOC_Os07g07750OsAffx.16144.1.S1_at11/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.4.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07750OsAffx.31174.5.S1_x_at1/117+3891122..3892476expressed protein
LOC_Os07g07760NANA7+3893590..3893979expressed protein
LOC_Os07g07770Os.38506.1.S1_s_at1/117+3894981..389812640S ribosomal protein S18, putative
LOC_Os07g07780OsAffx.28334.1.S1_at10/117+3901809..3907579hypothetical protein
LOC_Os07g07780Os.56346.1.S1_at3/117+3901809..3907579hypothetical protein
LOC_Os07g07790OsAffx.28335.1.S1_at11/117+3908961..3909606Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07800NANA7+3912066..3912922hypothetical protein
LOC_Os07g07820NANA7+3913221..3919134expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16144.1.S1_at--94--2231Chr07:3891155..3891179 (25 bp)
AAAGTTGCAGCGAGACTTTCCCTTA
LOC_Os07g07750
OsAffx.16144.1.S1_at--293--5691Chr07:3891168..3891192 (25 bp)
GACTTTCCCTTATTCTAGCTATCAT
LOC_Os07g07750
OsAffx.16144.1.S1_at--904--6331Chr07:3891193..3891217 (25 bp)
GATGCTAGAGATCCCATTCATTCAG
LOC_Os07g07750
OsAffx.16144.1.S1_at--780--6231Chr07:3891217..3891241 (25 bp)
GATGGCTGCAGGATTATCTGCCCTT
LOC_Os07g07750
OsAffx.16144.1.S1_at--888--9331Chr07:3891246..3891270 (25 bp)
TCGCGCCGATTCTTATGGTGATTAC
LOC_Os07g07750
OsAffx.16144.1.S1_at--361--7751Chr07:3891262..3891286 (25 bp)
GGTGATTACGCTCATTATACTGGGA
LOC_Os07g07750
OsAffx.16144.1.S1_at--1072--8531Chr07:3891299..3891323 (25 bp)
TGGAGCGAGCCTGAAATTGTGTGCA
LOC_Os07g07750
OsAffx.16144.1.S1_at--894--1011Chr07:3891357..3891381 (25 bp)
AGGTTCAGGTTATTCCTGAGCCCGC
LOC_Os07g07750
OsAffx.16144.1.S1_at--415--1671Chr07:3891375..3891399 (25 bp)
AGCCCGCTGCCGACAATGTGTGAAG
LOC_Os07g07750
OsAffx.16144.1.S1_at--263--8731Chr07:3892369..3892393 (25 bp)
TGTCTTTCTATTGGCTTCATTTTTT
LOC_Os07g07750
OsAffx.16144.1.S1_at--606--6171Chr07:3892414..3892438 (25 bp)
GAGGAGCATGATACTGCGCACAATG
LOC_Os07g07750
Target Sequence 
AAAGTTGCAGCGAGACTTTCCCTTATTCTAGCTATCATGATGCTAGAGATCCCATTCATTCAGATGGCTGCAGGATTATC
TGCCCTTGTGTTCGCGCCGATTCTTATGGTGATTACGCTCATTATACTGGGATGTATCTGGTGGTGGAGCGAGCCTGAAA
TTGTGTGCAGGTTCAGGTTATTCCTGAGCCCGCTGCCGACAATGTGTGAAGAACCGAAGAAATCAAACTTCAGGTTATCT
TCATGTCTTTCTATTGGCTTCATTTTTTTTTCTACGATGCTACCACATGAGGAGCATGATACTGCGCACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis