Browse Element(s) Details


OsAffx.16146.1.S1_x_at

Description tigr:9635.m00740
TID=OsAffx.16146.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cation channel family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0791011/11potassium channel AKT5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07860OsAffx.28337.1.S1_at9/117+3946445..3947647Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07870OsAffx.5247.1.S1_at11/117+3949100..3949881Protease inhibitor/seed storage/LTP family protein
LOC_Os07g07880Os.47739.1.S1_at11/117+3951283..3953194expressed protein
LOC_Os07g07890OsAffx.16145.1.S1_s_at11/117+3955666..3955881hypothetical protein
LOC_Os07g07900Os.9276.1.S1_s_at11/117+3956280..3958938expressed protein
LOC_Os07g07900Os.52184.1.S1_at10/117+3956280..3958938expressed protein
LOC_Os07g07910OsAffx.16146.1.S1_x_at11/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.10374.1.S1_at2/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.49900.1.S1_at1/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07920Os.9544.1.A1_at11/117+3974486..3976004Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07930Os.7242.1.S1_at11/117+3978511..3979560Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07940OsAffx.5249.1.S1_at10/117+3986913..3988823hypothetical protein
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009860biological_processpollen tube growth
GO:0042391biological_processregulation of membrane potential
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16146.1.S1_x_at--641--651Chr07:3973216..3973240 (25 bp)
ATGCAGCTCGCGTTCGCGTCGGCGA
LOC_Os07g07910
OsAffx.16146.1.S1_x_at--371--1611Chr07:3973394..3973418 (25 bp)
AGCGGATGGCCAACTTCCGCAACTC
LOC_Os07g07910
OsAffx.16146.1.S1_x_at--288--2171Chr07:3973443..3973467 (25 bp)
ACACGCGTTCCATCACGAAGGCGGA
LOC_Os07g07910
OsAffx.16146.1.S1_x_at--897--6691Chr07:3973449..3973473 (25 bp)
GTTCCATCACGAAGGCGGATACAGG
LOC_Os07g07910
OsAffx.16146.1.S1_x_at--605--8891Chr07:3973538..3973562 (25 bp)
TGAGGGTGGCCATCTCCTGCCCGGA
LOC_Os07g07910
OsAffx.16146.1.S1_x_at--289--4671Chr07:3973571..3973595 (25 bp)
GCGGGAAGGATCACAGCAGCAAGCT
LOC_Os07g07910
OsAffx.16146.1.S1_x_at--386--5051Chr07:3973586..3973610 (25 bp)
GCAGCAAGCTGGTGTTCATGCCGGA
LOC_Os07g07910
OsAffx.16146.1.S1_x_at--11--10531Chr07:3973600..3973624 (25 bp)
TTCATGCCGGAGACGCTGCGTGGTC
LOC_Os07g07910
OsAffx.16146.1.S1_x_at--725--1391Chr07:3973610..3973634 (25 bp)
AGACGCTGCGTGGTCTCCTCGAGCT
LOC_Os07g07910
OsAffx.16146.1.S1_x_at--341--8331Chr07:3973706..3973730 (25 bp)
GGCTCGTCAGGGACGGCGACCACCT
LOC_Os07g07910
OsAffx.16146.1.S1_x_at--559--9251Chr07:3973730..3973754 (25 bp)
TCCTCCTCGTCACTGACAAGTGGGT
LOC_Os07g07910
Target Sequence 
ATGCAGCTCGCGTTCGCGTCGGCGACGCGCCACGAGCCGCGCAAGGCTCGGCCGCCACCGCCGGCGTCGGCGATCGTGCC
GGTGCCGCTCCGCGACGGCGTGGACTCCTCGCCGTCGTCGTCGTCTCGGCGAGGGCGCACGTCCTCCACCTCCGCCGCCT
CCGCGCGCAGCACGCCGCAGCGGATGGCCAACTTCCGCAACTCCCTCTTCGGCGTCATCTCCTCGTCACACGCGTTCCAT
CACGAAGGCGGATACAGGGGCGGCGGCGGAGGCGGCGGCGCCGCCGCCGAGAGGGAGAGGTCGTCGAGCTCGCCGCCGCT
GGTGAGGGTGGCCATCTCCTGCCCGGAGTCGCGAGGCGGGAAGGATCACAGCAGCAAGCTGGTGTTCATGCCGGAGACGC
TGCGTGGTCTCCTCGAGCTCGGCGCGGCGAGGTTCGGGGTGTCGCCGACGAGGGTGGTGACGAGCGGCGGCGCCGACGTC
GACGACGCGCGGCTCGTCAGGGACGGCGACCACCTCCTCCTCGTCACTGACAAGTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16146.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis