Browse Element(s) Details


OsAffx.16196.1.S1_at

Description tigr:9635.m01018
TID=OsAffx.16196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1051011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10470Os.41695.5.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.3.S1_x_at9/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.2.S1_x_at8/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.15.S1_s_at6/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10470Os.41695.4.S1_x_at1/117+5629293..5633095Zinc knuckle family protein
LOC_Os07g10480Os.7774.1.S1_at8/117+5639207..5640443expressed protein
LOC_Os07g10480Os.7774.1.S1_x_at5/117+5639207..5640443expressed protein
LOC_Os07g10490Os.7230.1.S1_at11/117+5643930..5649527Zeta-carotene desaturase, chloroplast precursor, putative, expressed
LOC_Os07g10500Os.10469.1.S1_at3/117+5653417..5655273Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative
LOC_Os07g10510OsAffx.16196.1.S1_at11/117+5657352..5657573hypothetical protein
LOC_Os07g10520Os.14421.2.S1_x_at11/117+5658074..5666040WD40 associated region in TFIID subunit family protein, expressed
LOC_Os07g10530Os.6633.1.S1_at11/117+5680311..5683565Carboxyl-terminal peptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16196.1.S1_at--634--2151Chr07:5657506..5657530 (25 bp)
ACAGCGATAGTAGAGAAGCAGCAGC
LOC_Os07g10510
OsAffx.16196.1.S1_at--322--3411Chr07:5657488..5657512 (25 bp)
CAGCAGCAGGAAAGCTTAGCGGAGA
LOC_Os07g10510
OsAffx.16196.1.S1_at--1027--1151Chr07:5657439..5657463 (25 bp)
AGTCATCGGGTCGAGCGACGCCATC
LOC_Os07g10510
OsAffx.16196.1.S1_at--139--4411Chr07:5657411..5657435 (25 bp)
GCCACTTCCTGTCATCTAGGCAAGT
LOC_Os07g10510
OsAffx.16196.1.S1_at--771--2051Chr07:5657408..5657432 (25 bp)
ACTTCCTGTCATCTAGGCAAGTCCA
LOC_Os07g10510
OsAffx.16196.1.S1_at--683--9271Chr07:5657405..5657429 (25 bp)
TCCTGTCATCTAGGCAAGTCCATGA
LOC_Os07g10510
OsAffx.16196.1.S1_at--214--9611Chr07:5657400..5657424 (25 bp)
TCATCTAGGCAAGTCCATGACGCGC
LOC_Os07g10510
OsAffx.16196.1.S1_at--201--451Chr07:5657398..5657422 (25 bp)
ATCTAGGCAAGTCCATGACGCGCGT
LOC_Os07g10510
OsAffx.16196.1.S1_at--869--931Chr07:5657394..5657418 (25 bp)
AGGCAAGTCCATGACGCGCGTGCAA
LOC_Os07g10510
OsAffx.16196.1.S1_at--1099--5171Chr07:5657392..5657416 (25 bp)
GCAAGTCCATGACGCGCGTGCAAAG
LOC_Os07g10510
OsAffx.16196.1.S1_at--877--4331Chr07:5657386..5657410 (25 bp)
CCATGACGCGCGTGCAAAGGAAGGC
LOC_Os07g10510
Target Sequence 
ACAGCGATAGTAGAGAAGCAGCAGCAGGAAAGCTTAGCGGAGAAAGGGGGTGGAGTCGCCGCCAAGGAGTCATCGGGTCG
AGCGACGCCATCGCCGCCACTTCCTGTCATCTAGGCAAGTCCATGACGCGCGTGCAAAGGAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis