Browse Element(s) Details


OsAffx.16363.2.S1_at

Description tigr:9635.m02136
TID=OsAffx.16363.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2259011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22550OsAffx.22699.1.S1_x_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.16111.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.20615.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.10039.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22560OsAffx.22250.2.S1_x_at11/117+12692786..12695518hypothetical protein
LOC_Os07g22570Os.34643.1.S1_at11/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_s_at4/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_at1/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22580Os.32592.1.S1_at11/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22580Os.51549.1.S1_at1/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22590OsAffx.16363.2.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_x_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.4116.1.S1_x_at1/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22600Os.4599.1.S1_at10/117+12714877..12721201Spermidine synthase 1, putative, expressed
LOC_Os07g22610Os.38395.3.S1_x_at11/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.2.S1_x_at9/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.4.S1_x_at4/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.1.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.5.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22620NANA7+12729827..12734933retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16363.2.S1_at--1064--2431Chr07:12710504..12710528 (25 bp)
AAAAGGTCACATGGAGCGATGTCAA
LOC_Os07g22590
OsAffx.16363.2.S1_at--832--4611Chr07:12710519..12710543 (25 bp)
GCGATGTCAAATCGTGCTTCCACTT
LOC_Os07g22590
OsAffx.16363.2.S1_at--912--2271Chr07:12710527..12710551 (25 bp)
AAATCGTGCTTCCACTTCCAGGACA
LOC_Os07g22590
OsAffx.16363.2.S1_at--705--10671Chr07:12710542..12710566 (25 bp)
TTCCAGGACAGCAGCGCCAATCCTT
LOC_Os07g22590
OsAffx.16363.2.S1_at--102--7711Chr07:12711517..12711541 (25 bp)
GGTGTCAACGTAGGTAGGCAAAGAA
LOC_Os07g22590
OsAffx.16363.2.S1_at--116--8231Chr07:12711533..12711557 (25 bp)
GGCAAAGAAGCCCACAAGTCACCGC
LOC_Os07g22590
OsAffx.16363.2.S1_at--428--9731Chr07:12711567..12711591 (25 bp)
TCAAGTCCATGAGCCACCATCAATA
LOC_Os07g22590
OsAffx.16363.2.S1_at--893--1731Chr07:12711582..12711606 (25 bp)
ACCATCAATAAGTCCTCTCTGTGCT
LOC_Os07g22590
OsAffx.16363.2.S1_at--320--3191Chr07:12711587..12711611 (25 bp)
CAATAAGTCCTCTCTGTGCTGCCAT
LOC_Os07g22590
OsAffx.16363.2.S1_at--347--7311Chr07:12711602..12711626 (25 bp)
GTGCTGCCATCCAAGAGCCCAAGTA
LOC_Os07g22590
OsAffx.16363.2.S1_at--1101--1351Chr07:12711615..12711639 (25 bp)
AGAGCCCAAGTACACTAGAGATTTG
LOC_Os07g22590
Target Sequence 
AAAAGGTCACATGGAGCGATGTCAAATCGTGCTTCCACTTCCAGGACAGCAGCGCCAATCCTTGATGAAATTGGGGAGCA
TGGCGGGGAGCGCGGGGACGGGTGTCAACGTAGGTAGGCAAAGAAGCCCACAAGTCACCGCCCCTAGTCCTCAAGTCCAT
GAGCCACCATCAATAAGTCCTCTCTGTGCTGCCATCCAAGAGCCCAAGTACACTAGAGATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16363.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis