Browse Element(s) Details


OsAffx.16366.1.S1_at

Description gb:NM_187822.1
DB_XREF= gi:34902729
TID=OsAffx.16366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0710F09.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2289011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22830NANA7+12875247..12875930retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22840OsAffx.16365.1.S1_at11/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22840OsAffx.16365.1.S1_x_at11/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22840OsAffx.23616.1.S1_at1/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22850OsAffx.28544.2.S1_x_at11/117+12883052..12884397Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os07g22860OsAffx.25936.1.S1_s_at11/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.7.S1_s_at9/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.1.S1_at9/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.2.S1_x_at4/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.5.S1_x_at3/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22870NANA7+12893981..12894424hypothetical protein
LOC_Os07g22880Os.10827.1.S1_x_at7/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22880Os.46055.2.S1_x_at6/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22890OsAffx.16366.1.S1_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22890OsAffx.16366.2.S1_s_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22900NANA7+12903581..12904048hypothetical protein
LOC_Os07g22910Os.27775.1.A1_at3/117+12904553..12906955hypothetical protein
LOC_Os07g22920OsAffx.22238.2.S1_at9/117+12908385..12910176hypothetical protein
LOC_Os07g22920OsAffx.22238.1.S1_at2/117+12908385..12910176hypothetical protein
LOC_Os07g22930Os.9212.1.S1_at11/117+12914751..12922613Granule-bound starch synthase 1b, chloroplast precursor, putative, expressed
LOC_Os07g22940OsAffx.10041.1.S1_at11/117+12923824..12924198hypothetical protein
LOC_Os07g22950Os.32983.2.A1_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.2.A1_x_at11/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.32983.1.A1_at6/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed
LOC_Os07g22950Os.4978.1.S2_at1/117+12924788..12929007Adenylate kinase isoenzyme 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16366.1.S1_at--546--2771Chr07:12900465..12900522 (25 bp)
AAGACCGATGGAAGTATTTGCGAAG
LOC_Os07g22890
OsAffx.16366.1.S1_at--70--211Chr07:12900513..12900537 (25 bp)
ATTTGCGAAGATCATATTTGCTCTC
LOC_Os07g22890
OsAffx.16366.1.S1_at--733--231Chr07:12900526..12900550 (25 bp)
ATATTTGCTCTCATGGCATCCTTCT
LOC_Os07g22890
OsAffx.16366.1.S1_at--137--10871Chr07:12900563..12900587 (25 bp)
TTGGCTTGAGCCACGATACGCGCAA
LOC_Os07g22890
OsAffx.16366.1.S1_at--56--6491Chr07:12900577..12900601 (25 bp)
GATACGCGCAATGTTCTGGTTGTTC
LOC_Os07g22890
OsAffx.16366.1.S1_at--620--2971Chr07:12900586..12900610 (25 bp)
AATGTTCTGGTTGTTCGGGTTGACG
LOC_Os07g22890
OsAffx.16366.1.S1_at--841--7671Chr07:12900602..12900626 (25 bp)
GGGTTGACGGTCCTGCCAACATGTA
LOC_Os07g22890
OsAffx.16366.1.S1_at--211--9211Chr07:12900615..12900639 (25 bp)
TGCCAACATGTACGCACATCGCTGG
LOC_Os07g22890
OsAffx.16366.1.S1_at--192--5111Chr07:12900628..12900652 (25 bp)
GCACATCGCTGGTCCATCGGTGGTG
LOC_Os07g22890
OsAffx.16366.1.S1_at--990--931Chr07:12900675..12900699 (25 bp)
AGGCAAGGAGCGTCTACTTCGCTGT
LOC_Os07g22890
OsAffx.16366.1.S1_at--874--5871Chr07:12900682..12900706 (25 bp)
GAGCGTCTACTTCGCTGTGCCATGG
LOC_Os07g22890
Target Sequence 
AAGACCGATGGAAGTATTTGCGAAGATCATATTTGCTCTCATGGCATCCTTCTCGCGGCGCGCCGTTGGCTTGAGCCACG
ATACGCGCAATGTTCTGGTTGTTCGGGTTGACGGTCCTGCCAACATGTACGCACATCGCTGGTCCATCGGTGGTGGTGGC
GGCATGAGCACATGGGGAGGCAAGGAGCGTCTACTTCGCTGTGCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis