Browse Element(s) Details


OsAffx.16376.1.S1_at

Description tigr:9635.m02203
TID=OsAffx.16376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g231699/11expressed protein
LOC_Os02g506801/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23190OsAffx.16377.1.S1_x_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23190OsAffx.16377.1.S1_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed
LOC_Os07g23210Os.53746.1.S1_x_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23210Os.52686.1.S1_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16376.1.S1_at--1108--5111NONE
GCAAAGGTTTTAGAGCTCAGAGTTG
NONE
OsAffx.16376.1.S1_at--265--5912Chr07:13064594..13064617 (24 bp)
GAGCTCAGAGTTGGTTTGGAACTTT
LOC_Os07g23169
OsAffx.16376.1.S1_at--1062--7071Chr07:13064563..13064587 (25 bp)
GTCAAGTTCATGCATCTTTGAGGAT
LOC_Os07g23169
OsAffx.16376.1.S1_at--498--2831Chr07:13064560..13064584 (25 bp)
AAGTTCATGCATCTTTGAGGATAAA
LOC_Os07g23169
OsAffx.16376.1.S1_at--1089--331Chr07:13064540..13064564 (25 bp)
ATAAAGAATACTTTTGCCTATGGGC
LOC_Os07g23169
OsAffx.16376.1.S1_at--417--4451Chr07:13064525..13064549 (25 bp)
GCCTATGGGCATTTGAAAACTGTTG
LOC_Os07g23169
OsAffx.16376.1.S1_at--172--5531Chr07:13064511..13064535 (25 bp)
GAAAACTGTTGACACCCAGCATCAA
LOC_Os07g23169
OsAffx.16376.1.S1_at--813--8791Chr07:13064505..13064529 (25 bp)
TGTTGACACCCAGCATCAACAAATA
LOC_Os07g23169
OsAffx.16376.1.S1_at--922--3831Chr07:13064461..13064485 (25 bp)
CTGCTTCTGAAGTTATACATAATCC
LOC_Os07g23169
OsAffx.16376.1.S1_at--461--2831Chr07:13064455..13064476 (22 bp)
AAGTTATACATAATCCTGGAATCTC
LOC_Os07g23169
OsAffx.16376.1.S1_at--604--3031NONE
AATCCTGGAATCTCTAGTCCAAGCA
NONE
Target Sequence 
GCAAAGGTTTTAGAGCTCAGAGTTGGTTTGGAACTTTGGATTTGTCAAGTTCATGCATCTTTGAGGATAAAGAATACTTT
TGCCTATGGGCATTTGAAAACTGTTGACACCCAGCATCAACAAATACTTCTCCTTTCAATTTCTTCTGCTTCTGAAGTTA
TACATAATCCTGGAATCTCTAGTCCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis