Browse Element(s) Details


OsAffx.16376.1.S1_s_at

Description tigr:9635.m02203
TID=OsAffx.16376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2316911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23190OsAffx.16377.1.S1_x_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23190OsAffx.16377.1.S1_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed
LOC_Os07g23210Os.53746.1.S1_x_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23210Os.52686.1.S1_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16376.1.S1_s_at--642--4671Chr07:13066235..13066259 (25 bp)
GCGGAGGTGGAAGCCAACCCTGCCT
LOC_Os07g23169
OsAffx.16376.1.S1_s_at--349--8011Chr07:13066140..13066164 (25 bp)
GGAGGCCTGGACGAGCTTCCACCGT
LOC_Os07g23169
OsAffx.16376.1.S1_s_at--536--7231Chr07:13066117..13066141 (25 bp)
GTCGCCACACATGCGGCAAGTTTTT
LOC_Os07g23169
OsAffx.16376.1.S1_s_at--524--2091Chr07:13066112..13066133 (22 bp)
ACATGCGGCAAGTTTTTCAAGGAAA
LOC_Os07g23169
OsAffx.16376.1.S1_s_at--287--5231Chr07:13065304..13065328 (25 bp)
GAATTTCCAGAACTTCTTAACAGCA
LOC_Os07g23169
OsAffx.16376.1.S1_s_at--825--3751Chr07:13063859..13063883 (25 bp)
CTCTAGTCCAAGCACAACTGTATAT
LOC_Os07g23169
OsAffx.16376.1.S1_s_at--615--6471Chr07:13063759..13063783 (25 bp)
GATAGGTTCCATCCTTTTTTACTGG
LOC_Os07g23169
OsAffx.16376.1.S1_s_at--420--10351Chr07:13063745..13063769 (25 bp)
TTTTTTACTGGATGCTTCGAAGGAA
LOC_Os07g23169
OsAffx.16376.1.S1_s_at--11--5531Chr07:13063723..13063747 (25 bp)
GAAACTTTTCCAGATTGGTTGTTCT
LOC_Os07g23169
OsAffx.16376.1.S1_s_at--477--10831Chr07:13063709..13063733 (25 bp)
TTGGTTGTTCTGCAAATCCTGTCGA
LOC_Os07g23169
OsAffx.16376.1.S1_s_at--5--9491Chr07:13063701..13063725 (25 bp)
TCTGCAAATCCTGTCGAAGTCCATG
LOC_Os07g23169
Target Sequence 
GCGGAGGTGGAAGCCAACCCTGCCTTCTCCTACCACCTCTCCCCATTTCCCACGACCGTCGGCACCCCGGAGACGCCGCC
GCCGCCGCCGCCCTCGGAGGCCTGGACGAGCTTCCACCGTCGCCACACATGCGGCAAGTTTTTCAAGGAAAGAAGGTATT
TGCTAAAGGAATTTCCAGAACTTCTTAACAGCAAGGATAGTGCAAAGGTTTTAGAGCTCAGAGTTGGTTTGGAACTTTGG
ATTTGTCAAGTTCATGCATCTTTGAGGATAAAGAATACTTTTGCCTATGGGCATTTGAAAACTGTTGACACCCAGCATCA
ACAAATACTTCTCCTTTCAATTTCTTCTGCTTCTGAAGTTATACATAATCCTGGAATCTCTAGTCCAAGCACAACTGTAT
ATGCTTGTGATTGTAGCAAAGAAACTCTGGAGAAGGCAAATGAGATTGTTTGCAGCACAAAAGGAGTTGAAGTCAAGGAT
AGGTTCCATCCTTTTTTACTGGATGCTTCGAAGGAAACTTTTCCAGATTGGTTGTTCTGCAAATCCTGTCGAAGTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16376.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis