Browse Element(s) Details


OsAffx.16593.1.S1_at

Description tigr:9635.m03696
TID=OsAffx.16593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3730011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein
LOC_Os07g37270Os.46448.1.S1_at11/117+22332247..22336738Membrane associated protein, putative, expressed
LOC_Os07g37280Os.11147.1.S1_at11/117+22338281..22339707expressed protein
LOC_Os07g37280OsAffx.28795.1.S1_at10/117+22338281..22339707expressed protein
LOC_Os07g37290NANA7+22341758..22341979hypothetical protein
LOC_Os07g37300OsAffx.16593.1.S1_at11/117+22343802..22344275hypothetical protein
LOC_Os07g37310Os.23100.1.S1_at10/117+22344763..22346569expressed protein
LOC_Os07g37320Os.26932.1.S1_at11/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37320OsAffx.7485.1.S1_x_at1/117+22351405..22354105Glucose transporter, putative, expressed
LOC_Os07g37330NANA7+22360837..22361230hypothetical protein
LOC_Os07g37340NANA7+22365611..22365910hypothetical protein
LOC_Os07g37350Os.5797.1.S1_at11/117+22368586..22370786Armadillo/beta-catenin-like repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16593.1.S1_at--67--691Chr07:22343836..22343860 (25 bp)
ATGAGAGTTGCTTGTACACCGCTGT
LOC_Os07g37300
OsAffx.16593.1.S1_at--150--4771Chr07:22343862..22343886 (25 bp)
GCTGCAGCGCTTGACAGGTTGAGCA
LOC_Os07g37300
OsAffx.16593.1.S1_at--825--10531Chr07:22343890..22343914 (25 bp)
TTCAGGAGCACGGTACCATCGGCAG
LOC_Os07g37300
OsAffx.16593.1.S1_at--912--3291Chr07:22343960..22343984 (25 bp)
CACAATTGGTGGCTGCCTATTGCCA
LOC_Os07g37300
OsAffx.16593.1.S1_at--594--7311Chr07:22344014..22344038 (25 bp)
GTGCACCGTTGGATTGGTCACCTCG
LOC_Os07g37300
OsAffx.16593.1.S1_at--159--7111Chr07:22344030..22344054 (25 bp)
GTCACCTCGCGCTGCTGTGATGTGA
LOC_Os07g37300
OsAffx.16593.1.S1_at--881--7391Chr07:22344046..22344070 (25 bp)
GTGATGTGATGCCTCTCCTTCATGC
LOC_Os07g37300
OsAffx.16593.1.S1_at--359--591Chr07:22344067..22344091 (25 bp)
ATGCCACAAGGCAGCGTACTTTGGT
LOC_Os07g37300
OsAffx.16593.1.S1_at--672--6491Chr07:22344092..22344116 (25 bp)
GATAGACGATGTGACCCAAGTGGCA
LOC_Os07g37300
OsAffx.16593.1.S1_at--877--2871Chr07:22344109..22344133 (25 bp)
AAGTGGCAGCGATTGCCTCTTTGGC
LOC_Os07g37300
OsAffx.16593.1.S1_at--1091--4791Chr07:22344209..22344233 (25 bp)
GCTCGCCGCCTCAGGTGTGAAAGAA
LOC_Os07g37300
Target Sequence 
ATGAGAGTTGCTTGTACACCGCTGTCGCTGCAGCGCTTGACAGGTTGAGCAGGGTTCAGGAGCACGGTACCATCGGCAGC
TTCCCCTCTGACACCGCCGCATCGTTCGGGGTTGGGGAGTGCAACACAATTGGTGGCTGCCTATTGCCACCGCTTGCCTA
CAGCGACACGGGCTGGGAGTGCACCGTTGGATTGGTCACCTCGCGCTGCTGTGATGTGATGCCTCTCCTTCATGCCACAA
GGCAGCGTACTTTGGTGATAGACGATGTGACCCAAGTGGCAGCGATTGCCTCTTTGGCTTCCTCCATCGCCACCACTCGC
CTCCTAGGGGAGGGCAGCGAGCGGGCTTGCACTGCCCGTCGAAGGGGTGTTGCGCTCGCCGCCTCAGGTGTGAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis