Browse Element(s) Details


OsAffx.16660.1.S1_at

Description tigr:9635.m04079
TID=OsAffx.16660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4081011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40770OsAffx.16658.1.S1_at11/117+24427608..24431841expressed protein
LOC_Os07g40770Os.46451.1.S1_at1/117+24427608..24431841expressed protein
LOC_Os07g40780OsAffx.16659.1.S1_at11/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40780OsAffx.27050.1.S1_x_at1/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40790Os.54224.1.S1_x_at11/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.54224.1.S1_at10/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.47385.1.S1_at4/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40800Os.48371.1.S1_at9/117+24449939..24453879expressed protein
LOC_Os07g40800Os.57429.1.S1_s_at1/117+24449939..24453879expressed protein
LOC_Os07g40810OsAffx.16660.1.S1_at11/117+24454435..24458215NB-ARC domain containing protein
LOC_Os07g40820OsAffx.16653.3.A1_at11/117+24459197..24460741pentatricopeptide, putative
LOC_Os07g40830Os.55100.1.S1_at11/117+24465011..24465690expressed protein
LOC_Os07g40830OsAffx.14586.1.S1_s_at1/117+24465011..24465690expressed protein
LOC_Os07g40840OsAffx.16662.1.S1_at11/117+24467050..24467383hypothetical protein
LOC_Os07g40850Os.11225.1.S1_at11/117+24468413..24469419expressed protein
LOC_Os07g40860Os.13996.1.S1_at11/117+24470742..24471884expressed protein
LOC_Os07g40870Os.52211.1.S1_at11/117+24475685..24476458expressed protein
LOC_Os07g40880OsAffx.16663.1.S1_s_at8/117+24477650..24479221hypothetical protein
LOC_Os07g40880OsAffx.16663.1.S1_x_at4/117+24477650..24479221hypothetical protein
LOC_Os07g40890Os.6669.1.S1_at11/117+24479558..24480255expressed protein
LOC_Os07g40900Os.49602.1.A1_at11/117+24481792..24483225retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16660.1.S1_at--273--9251Chr07:24454933..24454957 (25 bp)
TCCTTTGCTTTCCAACATCACAGAA
LOC_Os07g40810
OsAffx.16660.1.S1_at--859--371Chr07:24454917..24454941 (25 bp)
ATCACAGAATTAACCCTTCGCGCAA
LOC_Os07g40810
OsAffx.16660.1.S1_at--1032--931Chr07:24454858..24454882 (25 bp)
AGGAAGTTTACCTAGCCTGCTATAC
LOC_Os07g40810
OsAffx.16660.1.S1_at--1024--5191Chr07:24454779..24454803 (25 bp)
GAATTCCCATCTCTTAGACTGCTTG
LOC_Os07g40810
OsAffx.16660.1.S1_at--726--1391Chr07:24454764..24454788 (25 bp)
AGACTGCTTGTCATTCATCTCGACA
LOC_Os07g40810
OsAffx.16660.1.S1_at--900--5891Chr07:24454680..24454704 (25 bp)
GAGCTGTCTCTGTTCGAAGAAGCCT
LOC_Os07g40810
OsAffx.16660.1.S1_at--994--331Chr07:24454644..24454668 (25 bp)
ATCACTGGCATAGAGTTCCTTCCGA
LOC_Os07g40810
OsAffx.16660.1.S1_at--508--5331Chr07:24454611..24454635 (25 bp)
GAAGTCTCGATTCGTGCTTGTCACA
LOC_Os07g40810
OsAffx.16660.1.S1_at--599--6491Chr07:24454564..24454588 (25 bp)
GATAGCTACCTCTCTGAGGGCTGAT
LOC_Os07g40810
OsAffx.16660.1.S1_at--862--2371Chr07:24454521..24454545 (25 bp)
AAACCCATCGTCACTTTCGAGGAGA
LOC_Os07g40810
OsAffx.16660.1.S1_at--373--5751Chr07:24454471..24454495 (25 bp)
GACGGATCCTCCTTTAGATCACATG
LOC_Os07g40810
Target Sequence 
TCCTTTGCTTTCCAACATCACAGAATTAACCCTTCGCGCAACCGAACTAAGCGCCGAGGAAGACCTGAAGGTACTAGGAA
GTTTACCTAGCCTGCTATACCTCAGGTTGCATCACAATGCATACATAGGAACAGAATTTTCTGCTTCAGCAGGGGAATTC
CCATCTCTTAGACTGCTTGTCATTCATCTCGACATGTCTGAAGATTGGGAGGCAAGATTTGAAGAAGGGGCACTACCAAA
GCTAGCAAGGCTAGAGCTGTCTCTGTTCGAAGAAGCCTCCATCCAAGAGATCACTGGCATAGAGTTCCTTCCGAGTCTGA
AGGAAGTCTCGATTCGTGCTTGTCACAGCAATATCGTGAATGTGGAAGAGATAGCTACCTCTCTGAGGGCTGATGCCGAG
AAGAACATCAACAAACCCATCGTCACTTTCGAGGAGAAACAGTGGGTGCCGATGAGGTCAAGGACGGATCCTCCTTTAGA
TCACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis