Browse Element(s) Details


OsAffx.16663.1.S1_x_at

Description gb:NM_190133.1
DB_XREF= gi:34907349
GEN=P0471B04.9
TID=OsAffx.16663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0471B04.9 (P0471B04.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g656107/11hypothetical protein
LOC_Os02g470405/11hypothetical protein
LOC_Os07g408804/11hypothetical protein
LOC_Os04g428303/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65580Os.33977.1.S1_at11/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65580Os.33977.2.S1_x_at10/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65590Os.6437.1.S1_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65590OsAffx.11744.1.S1_x_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65600Os.26297.1.S1_at11/111+38408524..38412329PHD-finger family protein, expressed
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein
LOC_Os01g65620Os.57203.1.S1_at11/111+38425786..38426477expressed protein
LOC_Os01g65630Os.11443.1.S1_a_at11/111+38428398..38429840expressed protein
LOC_Os01g65640OsAffx.11745.1.S1_at11/111+38433709..38434251hypothetical protein
LOC_Os01g65650Os.12640.1.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65650Os.12640.2.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65660Os.17259.1.S1_at11/111+38444788..38447609amino acid permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16663.1.S1_x_at--910--9914Chr06:3562856..3562880 (25 bp)
TACGTGCTTGCAGACGGCGAACGAC
NONE
OsAffx.16663.1.S1_x_at--271--4753Chr07:24478051..24478176 (25 bp)
GCTGAAGCTGCTGGCCGACGCCGAC
LOC_Os07g40880
OsAffx.16663.1.S1_x_at--244--5811Chr01:38420616..38420640 (25 bp)
GACGCCGACATCTCGCTGGAGGAGT
LOC_Os01g65610
OsAffx.16663.1.S1_x_at--240--476Chr07:24478178..24478201 (24 bp)
ATCTCGCTGGAGGAGTTCGGTGACT
LOC_Os07g40880
OsAffx.16663.1.S1_x_at--224--997Chr07:24478187..24478211 (25 bp)
AGGAGTTCGGTGACTCGCTGTGCCC
LOC_Os07g40880
OsAffx.16663.1.S1_x_at--1055--10734Chr07:24478226..24478245 (20 bp)
TTGCACCGGCGAACTCTTGACCCTG
LOC_Os07g40880
OsAffx.16663.1.S1_x_at--371--10753Chr02:28701189..28701213 (25 bp)
TTGACCCTGCCGGATAGCAACTTCG
LOC_Os02g47040
OsAffx.16663.1.S1_x_at--288--4631Chr01:38421075..38421099 (25 bp)
GCGATGAGCTCGTGCACCGCAGGTT
NONE
OsAffx.16663.1.S1_x_at--288--6311Chr01:38421077..38421101 (25 bp)
GATGAGCTCGTGCACCGCAGGTTCC
NONE
OsAffx.16663.1.S1_x_at--922--8915Chr06:3563509..3563532 (24 bp)
TGAGCTCGTGCACCGCAGGTTCCTC
NONE
OsAffx.16663.1.S1_x_at--1029--16517Chr07:29559266..29559321 (25 bp)
AGCCCCGGATGCCACGTCAGCAAAA
NONE
Target Sequence 
TACGTGCTTGCAGACGGCGAACGACACGACGGCGCCGGCGAAGCCCGCCGGGGCCGGGCCGCAGCTGAAGCTGCTGGCCG
ACGCCGACATCTCGCTGGAGGAGTTCGGTGACTCGCTGTGCCCGCCGATCCCTTGCACCGGCGAACTCTTGACCCTGCCG
GATAGCAACTTCGCCGTCGTCACCGACCGGCCACTACTCTACGTGCAGGTGACGAGGCTGAGGTGTGGCGGCTTCGTGTT
CAGCACCCAGATCTGCCACAACCTCGTCGACGCGGCGGGGATCACGCAATTCTTGCAGGCCGTCGGTGAGCTCGTGGAAG
GCGCGGAGCGTCCGGCCGGCGATGAGCTCGTGCACCGCAGGTTCCTCTCCGGCCCCGACGACGTCGCCGCGTTGCGCGAC
CAGCTCCCCACGCGCCTCAGCCCCGGATGCCACGTCAGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16663.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis