Browse Element(s) Details


OsAffx.16735.1.S1_at

Description tigr:9635.m04679
TID=OsAffx.16735.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Annexin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4655011/11Annexin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46500Os.11488.1.S1_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46500Os.44618.1.S1_s_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46510Os.34873.1.S1_at11/117+27779362..27780298expressed protein
LOC_Os07g46520OsAffx.28932.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_x_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46530OsAffx.16734.1.S1_at11/117+27788969..27789283hypothetical protein
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed
LOC_Os07g46570Os.37097.1.S1_at11/117+27812440..27813522Glutaredoxin family protein, expressed
LOC_Os07g46580OsAffx.22532.2.S1_x_at11/117+27818221..27822069ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os07g46590Os.14772.1.S1_s_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S1_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.2.S1_x_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.11138.1.S2_a_at11/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed
LOC_Os07g46590Os.14772.1.S1_x_at2/117+27824101..27831876Chromodomain-helicase-DNA-binding protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16735.1.S1_at--697--2571Chr07:27799942..27799966 (25 bp)
AACGGGACGCGAACCTAGTGCACGA
LOC_Os07g46550
OsAffx.16735.1.S1_at--572--5991Chr07:27799897..27799921 (25 bp)
GAGACGAGACCTACTACATGTCCGT
LOC_Os07g46550
OsAffx.16735.1.S1_at--815--2111Chr07:27799887..27799906 (20 bp)
ACATGTCCGTGCTGATCGAGATGCT
LOC_Os07g46550
OsAffx.16735.1.S1_at--701--911Chr07:27799605..27799629 (25 bp)
AGGCTGGTGAGCTCGTACCGCTACG
LOC_Os07g46550
OsAffx.16735.1.S1_at--327--911Chr07:27799538..27799562 (25 bp)
AGGCGTCTCAGCTGGCAGAAGCCAT
LOC_Os07g46550
OsAffx.16735.1.S1_at--35--6151Chr07:27799482..27799506 (25 bp)
GAGGTCGTTCGGATTGTGACCACTC
LOC_Os07g46550
OsAffx.16735.1.S1_at--1154--10211Chr07:27799228..27799252 (25 bp)
TATTGACAGCCATTGCATCGGCCAG
LOC_Os07g46550
OsAffx.16735.1.S1_at--234--2771Chr07:27799188..27799212 (25 bp)
AAGACCGCCGTGTGGTGCTTAACAT
LOC_Os07g46550
OsAffx.16735.1.S1_at--482--411Chr07:27799038..27799062 (25 bp)
ATCAGGCACTCGATCTTGGGATTGG
LOC_Os07g46550
OsAffx.16735.1.S1_at--33--1351Chr07:27798990..27799014 (25 bp)
AGAGTAATCGTGTCGCGTGCTGAGA
LOC_Os07g46550
OsAffx.16735.1.S1_at--278--3291Chr07:27798892..27798916 (25 bp)
CACATCGTTCGGTTACAAGGGCTTC
LOC_Os07g46550
Target Sequence 
AACGGGACGCGAACCTAGTGCACGAAGCACTGAAGAAGAAGCAGAGAGACGAGACCTACTACATGTCCGTGCTGATCGAG
ATGCTGGTGAGGCTGGTGAGCTCGTACCGCTACGAGGGAGATGAGTGCGTCGTCGACATGGACGTGGTGAGGATGGAGGC
GTCTCAGCTGGCAGAAGCCATCAAGAAGAAGAAGCAGCCGCGCGGGGAAGACGAGGTCGTTCGGATTGTGACCACTCGGA
GCAAGTCCCAGCTCAGGGCAACGTTTCAGAGATACAGAGAGGATCATGGTTCAGACATAGCTGAGGATATTGACAGCCAT
TGCATCGGCCAGTTTGGCAGGATGCTGAAGACCGCCGTGTGGTGCTTAACATCACCTGAAAAACACTTTGCAGAGGTGAT
CAGGCACTCGATCTTGGGATTGGGGACGTACGAGGACATGCTCACCAGAGTAATCGTGTCGCGTGCTGAGATCGACATGA
GACACATCAGGGAGGAGTACAAGGTCAGGTACAAGACCACCGTCACTCGCGACGTCGTCGGCGACACATCGTTCGGTTAC
AAGGGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis