Browse Element(s) Details


OsAffx.16757.1.S1_at

Description tigr:9635.m04835
TID=OsAffx.16757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4794011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47890Os.24831.1.S1_x_at8/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.3.S1_x_at7/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.3.S1_s_at6/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.2.S1_at4/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47890Os.24831.4.S1_x_at1/117+28603136..28605484retrotransposon protein, putative, unclassified
LOC_Os07g47900Os.45721.1.S1_x_at1/117+28605909..28608425retrotransposon protein, putative, unclassified
LOC_Os07g47910OsAffx.6261.1.S1_x_at1/117+28611795..28614796retrotransposon protein, putative, unclassified
LOC_Os07g47920OsAffx.22699.1.S1_x_at3/117+28618272..28622033retrotransposon protein, putative, unclassified
LOC_Os07g47930NANA7+28625728..28626270hypothetical protein
LOC_Os07g47940OsAffx.16757.1.S1_at11/117+28628830..28629325expressed protein
LOC_Os07g47950OsAffx.16758.1.S1_at11/117+28636154..28641083Protein kinase domain containing protein
LOC_Os07g47960OsAffx.28948.1.S1_at11/117+28648014..28649925expressed protein
LOC_Os07g47960Os.19277.1.S1_at1/117+28648014..28649925expressed protein
LOC_Os07g47970NANA7+28653343..28653681hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16757.1.S1_at--627--3811Chr07:28629271..28629295 (25 bp)
CTCCTGTGCTGCCTTGCCACGAGAT
LOC_Os07g47940
OsAffx.16757.1.S1_at--532--9111Chr07:28629265..28629289 (25 bp)
TGCTGCCTTGCCACGAGATCCTGTA
LOC_Os07g47940
OsAffx.16757.1.S1_at--335--10691Chr07:28629258..28629282 (25 bp)
TTGCCACGAGATCCTGTACCGCTCG
LOC_Os07g47940
OsAffx.16757.1.S1_at--83--571Chr07:28629248..28629272 (25 bp)
ATCCTGTACCGCTCGCCATGGAGCT
LOC_Os07g47940
OsAffx.16757.1.S1_at--887--4331Chr07:28629233..28629257 (25 bp)
CCATGGAGCTGTTCGGGAGCTTTCC
LOC_Os07g47940
OsAffx.16757.1.S1_at--1078--1571Chr07:28629227..28629251 (25 bp)
AGCTGTTCGGGAGCTTTCCTCTGAC
LOC_Os07g47940
OsAffx.16757.1.S1_at--385--3971Chr07:28629220..28629244 (25 bp)
CGGGAGCTTTCCTCTGACCCGCGGG
LOC_Os07g47940
OsAffx.16757.1.S1_at--1161--7551Chr07:28629197..28629221 (25 bp)
GGGCGCTGCTGTTATGCAGACCATG
LOC_Os07g47940
OsAffx.16757.1.S1_at--746--4731Chr07:28629190..28629214 (25 bp)
GCTGTTATGCAGACCATGACGGATC
LOC_Os07g47940
OsAffx.16757.1.S1_at--386--651Chr07:28629184..28629208 (25 bp)
ATGCAGACCATGACGGATCGCACTT
LOC_Os07g47940
OsAffx.16757.1.S1_at--79--5831Chr07:28629179..28629203 (25 bp)
GACCATGACGGATCGCACTTGGTTC
LOC_Os07g47940
Target Sequence 
CTCCTGTGCTGCCTTGCCACGAGATCCTGTACCGCTCGCCATGGAGCTGTTCGGGAGCTTTCCTCTGACCCGCGGGGCGC
TGCTGTTATGCAGACCATGACGGATCGCACTTGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis