Browse Element(s) Details


OsAffx.16859.1.S1_at

Description tigr:9636.m00610
TID=OsAffx.16859.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0674011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein
LOC_Os08g06750OsAffx.17666.1.S1_at1/118+3770421..3770833hypothetical protein
LOC_Os08g06760OsAffx.16860.1.S1_at11/118+3772472..3773755hypothetical protein
LOC_Os08g06770OsAffx.16861.1.S1_at11/118+3774769..3777142hypothetical protein
LOC_Os08g06770OsAffx.10584.1.S1_at1/118+3774769..3777142hypothetical protein
LOC_Os08g06780Os.30615.1.S1_at1/118+3779519..3780768F-box domain containing protein
LOC_Os08g06790OsAffx.16862.1.S1_at10/118+3782594..3784548hypothetical protein
LOC_Os08g06790OsAffx.5853.1.S1_at1/118+3782594..3784548hypothetical protein
LOC_Os08g06800Os.50220.1.S1_at11/118+3785754..3789194retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16859.1.S1_at--695--9171Chr08:3768012..3768260 (25 bp)
TCGCCACTGAGTGCAACTTGACCAA
LOC_Os08g06740
OsAffx.16859.1.S1_at--271--10751Chr08:3768253..3768277 (25 bp)
TTGACCAAGAATCTCGTCGCGGCGT
LOC_Os08g06740
OsAffx.16859.1.S1_at--640--8871Chr08:3768290..3768314 (25 bp)
TGAGGCGGCAGATCCAGTTCGTGAC
LOC_Os08g06740
OsAffx.16859.1.S1_at--704--5331Chr08:3768357..3768381 (25 bp)
GAAGTCGGTCCAGCTCCTGAGAGAG
LOC_Os08g06740
OsAffx.16859.1.S1_at--96--5411Chr08:3768381..3768405 (25 bp)
GAAGCTCGCAGGCATTCTGGGCTAC
LOC_Os08g06740
OsAffx.16859.1.S1_at--718--10551Chr08:3768395..3768419 (25 bp)
TTCTGGGCTACGACGAGTTTACACT
LOC_Os08g06740
OsAffx.16859.1.S1_at--787--4751Chr08:3769131..3769155 (25 bp)
GCTGACGATCAGTTGCTATTCCCAA
LOC_Os08g06740
OsAffx.16859.1.S1_at--203--5071Chr08:3769204..3769228 (25 bp)
GCAGCTCTTCTTCCGACAGAGGATA
LOC_Os08g06740
OsAffx.16859.1.S1_at--1111--1191Chr08:3769232..3769256 (25 bp)
AGTTTCAGGCTCCAATGGTCTCAGA
LOC_Os08g06740
OsAffx.16859.1.S1_at--1099--8591Chr08:3769247..3769271 (25 bp)
TGGTCTCAGATTGCCATTGATCACA
LOC_Os08g06740
OsAffx.16859.1.S1_at--670--4891Chr08:3769317..3769341 (25 bp)
GCTTATACCCTTCCTTTGACGGATA
LOC_Os08g06740
Target Sequence 
TCGCCACTGAGTGCAACTTGACCAAGAATCTCGTCGCGGCGTGCTTTCCCCCGCTGAGGCGGCAGATCCAGTTCGTGACG
GCCGGCGCAGGCGCCGCCGGCAACATCGACGTGTTCACCGGGAAGTCGGTCCAGCTCCTGAGAGAGAAGCTCGCAGGCAT
TCTGGGCTACGACGAGTTTACACTCTGCGTCCGCGCCGGCATCCATGGGCGGCTAACTCCTCTGCTCATCGACCTGCCTC
GCAGCCGGGAGACCCTGCACATCGTCCTTGTCAGGCCCAACAGTGAAGCTGACGATCAGTTGCTATTCCCAAATCTGAAT
GCATTGTTGTTACTTGCCTCGGTTACCTCTCACATCTCCGGCAGCTCTTCTTCCGACAGAGGATATGCAGTTTCAGGCTC
CAATGGTCTCAGATTGCCATTGATCACACTGAGGCCCAATGAAACTGCTCCGCAGAGCTCGACGCCTCACAATGCTTATA
CCCTTCCTTTGACGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis