Browse Element(s) Details


OsAffx.16943.1.S1_at

Description tigr:9636.m01056
TID=OsAffx.16943.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1091011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10880OsAffx.29142.1.S1_at11/118+6405533..6406820hypothetical protein
LOC_Os08g10890OsAffx.11259.1.S1_at2/118+6410015..6416679hypothetical protein
LOC_Os08g10890OsAffx.8338.1.S1_x_at1/118+6410015..6416679hypothetical protein
LOC_Os08g10900OsAffx.26082.3.S1_at4/118+6421284..6422336retrotransposon protein, putative, unclassified
LOC_Os08g10910OsAffx.16943.1.S1_at11/118+6423835..6424284hypothetical protein
LOC_Os08g10920Os.52039.1.S1_at11/118+6425934..6427816retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10930OsAffx.16944.1.S1_at11/118+6433164..6437794hypothetical protein
LOC_Os08g10940OsAffx.20650.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.32036.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.3521.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.30387.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16943.1.S1_at--66--5371Chr08:6424215..6424239 (25 bp)
GAAGACCTTCGCCATAAAGATGACG
LOC_Os08g10910
OsAffx.16943.1.S1_at--1118--5551Chr08:6424156..6424180 (25 bp)
GAAAGCGCAGAGCAAATCCCTCATA
LOC_Os08g10910
OsAffx.16943.1.S1_at--987--5231Chr08:6424126..6424150 (25 bp)
GAATAAATCTCTTCACGCTAACCTG
LOC_Os08g10910
OsAffx.16943.1.S1_at--1010--6451Chr08:6424077..6424101 (25 bp)
GATCAAGAACTTCGGCTTGCTGCGG
LOC_Os08g10910
OsAffx.16943.1.S1_at--165--5351Chr08:6424045..6424069 (25 bp)
GAAGATCCGGTCTCTTGAGGCTCGA
LOC_Os08g10910
OsAffx.16943.1.S1_at--247--7271Chr08:6423993..6424017 (25 bp)
GTCCTTGCGCCGGTGACGGAATCCA
LOC_Os08g10910
OsAffx.16943.1.S1_at--286--8931Chr08:6423980..6424004 (25 bp)
TGACGGAATCCACCAAACAAGCCTG
LOC_Os08g10910
OsAffx.16943.1.S1_at--469--2411Chr08:6423966..6423990 (25 bp)
AAACAAGCCTGCTATACCCTTTGGT
LOC_Os08g10910
OsAffx.16943.1.S1_at--582--9951Chr08:6423952..6423976 (25 bp)
TACCCTTTGGTTGGTGCTTAGTGAC
LOC_Os08g10910
OsAffx.16943.1.S1_at--973--9071Chr08:6423938..6423962 (25 bp)
TGCTTAGTGACCTTGGCGCGCGTGC
LOC_Os08g10910
OsAffx.16943.1.S1_at--612--8871Chr08:6423898..6423922 (25 bp)
TGATGGCGGAACAGCGTTCGGCTTC
LOC_Os08g10910
Target Sequence 
GAAGACCTTCGCCATAAAGATGACGAACGTAGGGTCGTGGCGGACGCCCTGAAGAAGGCGAAAGCGCAGAGCAAATCCCT
CATAGGGGAGAATAAATCTCTTCACGCTAACCTGAAGGGGGTGAACAAGAAGTCCGTTGATCAAGAACTTCGGCTTGCTG
CGGCCGAGGAGAAGATCCGGTCTCTTGAGGCTCGACTTGCCTCATCCGAAGCTGCTGCTGAGGTCCTTGCGCCGGTGACG
GAATCCACCAAACAAGCCTGCTATACCCTTTGGTTGGTGCTTAGTGACCTTGGCGCGCGTGCGGAGGGCGCCCTGGGTGA
TGGCGGAACAGCGTTCGGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis