Browse Element(s) Details


OsAffx.17006.1.S1_at

Description tigr:9636.m01523
TID=OsAffx.17006.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1519011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15120NANA8+9149954..9154445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.26999.1.A1_at3/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130OsAffx.15708.1.S1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.49936.2.A1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15149Os.7992.3.S1_x_at4/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.19082.1.S1_at3/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.55007.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149OsAffx.15222.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.49363.2.S1_at1/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15170Os.12211.1.S1_at10/118+9171008..9174114ATP synthase epsilon chain, mitochondrial, putative, expressed
LOC_Os08g15180OsAffx.5823.1.S1_at11/118+9174819..917566460s Acidic ribosomal protein
LOC_Os08g15190OsAffx.17006.1.S1_at11/118+9177466..9179344expressed protein
LOC_Os08g15204Os.5734.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15204OsAffx.29214.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17006.1.S1_at--135--691Chr08:9178289..9178313 (25 bp)
ATGACGAGATGAAGCCGACGGCAGC
LOC_Os08g15190
OsAffx.17006.1.S1_at--902--1931Chr08:9178306..9178430 (25 bp)
ACGGCAGCAACGTCTCCAGGAGAAA
LOC_Os08g15190
OsAffx.17006.1.S1_at--742--5072Chr08:9178490..9178514 (25 bp)
GCAGCGTCGCTCGATTTGACGGTGA
LOC_Os08g15190
OsAffx.17006.1.S1_at--689--3791Chr08:9178499..9178523 (25 bp)
CTCGATTTGACGGTGAGGGCCGACT
LOC_Os08g15190
OsAffx.17006.1.S1_at--162--3331Chr08:9178548..9178572 (25 bp)
CACTGGTTGCCGACGAGGATGCACT
LOC_Os08g15190
OsAffx.17006.1.S1_at--659--2791Chr08:9178611..9178635 (25 bp)
AAGAGGACGTTGCTGCGGAGCGTAT
LOC_Os08g15190
OsAffx.17006.1.S1_at--154--6171Chr08:9178655..9178679 (25 bp)
GAGGAGGTCGTGACCGCCGGCAAGG
LOC_Os08g15190
OsAffx.17006.1.S1_at--915--4771Chr08:9178459..9178953 (25 bp)
GCTGCGGAGCCGATTTTTGCATTCA
LOC_Os08g15190
OsAffx.17006.1.S1_at--543--4692Chr08:9178934..9178956 (23 bp)
GCGGAGCCGATTTTTGCATTCAATT
LOC_Os08g15190
OsAffx.17006.1.S1_at--616--10493Chr12:5179383..5179402 (20 bp)
TTCAATTTGGAGGAGAAACCACTGG
NONE
OsAffx.17006.1.S1_at--1049--931Chr08:9179049..9179073 (25 bp)
AGGAAGACGACCATCGGCTGGACCA
LOC_Os08g15190
Target Sequence 
ATGACGAGATGAAGCCGACGGCAGCAACGTCTCCAGGAGAAATAGAGGTTGGGCCGAGGAAGAGGAGGTGGCTGCGATGC
CGGTGGAGGCAAGGGCGCGCTGCAGCGTCGCTCGATTTGACGGTGAGGGCCGACTGGAGGAGAACGACGGCGGTGGCGCC
ACTGGTTGCCGACGAGGATGCACTCCCGGCGGCCTCTGGGCGAAACGGAGATGAGGCCGGGGAAGAGGACGTTGCTGCGG
AGCGTATGGTGGCGACGCTGGGCTCCGAGGAGGTCGTGACCGCCGGCAAGGGGCGGCCGGAGTTGCGCGACGGCGGCGAC
GCGAGAAGAAGGCGGCGCGGCAGCCAGGGAGAGAGGAGGGGGAGGGCTGCGGAGCCGATTTTTGCATTCAATTTGGAGGA
GAAACCACTGGGGAGGGAGATCAAGAGGGACGGCGGCGCTTCTGTTCTTCAGCTGGGAGAAGAACAGGCAGCGGTCGGCT
GGAGGAGGAAGACGACCATCGGCTGGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis