Browse Element(s) Details


OsAffx.17069.1.S1_at

Description tigr:9636.m01891
TID=OsAffx.17069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1927011/11hypothetical protein
LOC_Os06g144403/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19220Os.45976.1.S1_x_at1/118+11487582..11494927transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g19230OsAffx.29273.1.S1_at11/118+11498186..11498776hypothetical protein
LOC_Os08g19240OsAffx.5876.1.S1_at11/118+11504244..11504579hypothetical protein
LOC_Os08g19240OsAffx.25952.1.S1_s_at1/118+11504244..11504579hypothetical protein
LOC_Os08g19250OsAffx.19542.3.S1_x_at7/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250OsAffx.12926.1.S1_at2/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250Os.15946.1.S1_at1/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250OsAffx.21754.1.S1_x_at1/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19260NANA8+11513453..11515754hypothetical protein
LOC_Os08g19270OsAffx.17069.1.S1_at11/118+11519917..11524190hypothetical protein
LOC_Os08g19280OsAffx.22629.1.S1_at2/118+11527822..11529411hypothetical protein
LOC_Os08g19280OsAffx.13987.1.S1_at1/118+11527822..11529411hypothetical protein
LOC_Os08g19290OsAffx.29274.1.S1_at11/118+11531910..11532557hypothetical protein
LOC_Os08g19300OsAffx.20020.1.S1_x_at3/118+11535959..11536953retrotransposon protein, putative, unclassified
LOC_Os08g19300OsAffx.15695.1.S1_x_at2/118+11535959..11536953retrotransposon protein, putative, unclassified
LOC_Os08g19310NANA8+11546177..11548597hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17069.1.S1_at--1141--9971Chr08:11520514..11520689 (25 bp)
TACCACTGTGCACAAACTCACGTAA
LOC_Os08g19270
OsAffx.17069.1.S1_at--453--1891Chr08:11520495..11520519 (25 bp)
ACGTAATATTCTTTGTCCAGCTTGA
LOC_Os08g19270
OsAffx.17069.1.S1_at--164--4632Chr06:8100367..8100391 (25 bp)
GCGTCAACTTTTAAAGCCCCAAGCG
LOC_Os06g14440
OsAffx.17069.1.S1_at--364--2672Chr06:8100380..8100404 (25 bp)
AAGCCCCAAGCGTTAGATCTGGTTA
LOC_Os06g14440
OsAffx.17069.1.S1_at--153--6412Chr06:8100395..8100419 (25 bp)
GATCTGGTTATACTTGACACTACAC
LOC_Os06g14440
OsAffx.17069.1.S1_at--662--5631Chr08:11520090..11520114 (25 bp)
GACACTACACACCAAGAGGGTCTAG
LOC_Os08g19270
OsAffx.17069.1.S1_at--788--2991Chr08:11520059..11520083 (25 bp)
AATGTTCGCTATTGGACAGTCACGC
LOC_Os08g19270
OsAffx.17069.1.S1_at--12--10331Chr08:11520017..11520041 (25 bp)
TTCGTCTTACTCGTACGTCTAACCA
LOC_Os08g19270
OsAffx.17069.1.S1_at--787--2632Chr08:11519997..11520021 (25 bp)
AACCACGCCTGCATGCAAATATCTG
LOC_Os08g19270
OsAffx.17069.1.S1_at--429--9932Chr08:11519965..11519989 (25 bp)
TACGTGTTCACATGAGAGTTGCTCT
LOC_Os08g19270
OsAffx.17069.1.S1_at--1055--10712Chr08:11519947..11519971 (25 bp)
TTGCTCTAAGCCTGCCTTTTCAAAG
LOC_Os08g19270
Target Sequence 
TACCACTGTGCACAAACTCACGTAATATTCTTTGTCCAGCTTGATACAAATGAAGACATGTCCAATGAAAAAGATGTGGA
TGATGAAAATGAGATGGATGATGACTGCAATCATGACATTCGGATTCATGAAGATCTAGGCCACGTATGCCGTATTTGTG
GCATGATTGTTAGAAAGGCTGAAACAATAATTGATTATCAGTGGAAAAAGCGTCAACTTTTAAAGCCCCAAGCGTTAGAT
CTGGTTATACTTGACACTACACACCAAGAGGGTCTAGTATATGAATGTTCGCTATTGGACAGTCACGCGAACGGTTCCGA
CAACCTTCGTCTTACTCGTACGTCTAACCACGCCTGCATGCAAATATCTGTTACTAATACGTGTTCACATGAGAGTTGCT
CTAAGCCTGCCTTTTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis