Browse Element(s) Details


OsAffx.17116.1.S1_at

Description tigr:9636.m02313
TID=OsAffx.17116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2369011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23630NANA8+14168200..14173377retrotransposon protein, putative, unclassified
LOC_Os08g23640OsAffx.5904.1.S1_at3/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23640Os.28943.1.S1_x_at2/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45161.1.A1_x_at3/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45974.1.A1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.13882.2.S1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.22699.1.S1_x_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.30486.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.593.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23670NANA8+14186856..14187658hypothetical protein
LOC_Os08g23680Os.14860.1.S1_at11/118+14188455..14195291FHA domain containing protein, expressed
LOC_Os08g23690OsAffx.17116.1.S1_at11/118+14195712..14196149hypothetical protein
LOC_Os08g23700Os.53734.1.S1_at10/118+14198165..14205514transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g23710Os.4696.1.S1_at11/118+14207673..1421009760S ribosomal protein L7a, putative, expressed
LOC_Os08g23720Os.30016.1.S1_at11/118+14216532..14221737Glycosyl hydrolases family 17 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17116.1.S1_at--672--5611Chr08:14195759..14195783 (25 bp)
GACAACCAATGAGCTAGCTCGAGAC
LOC_Os08g23690
OsAffx.17116.1.S1_at--906--1911Chr08:14195827..14195851 (25 bp)
ACGGTGGTGCTCCTCTGCCTAGCGC
LOC_Os08g23690
OsAffx.17116.1.S1_at--1114--10631Chr08:14195856..14195880 (25 bp)
TTCCCTGCACCGATCTACGTGGCAG
LOC_Os08g23690
OsAffx.17116.1.S1_at--660--5091Chr08:14195862..14195886 (25 bp)
GCACCGATCTACGTGGCAGAAGAAA
LOC_Os08g23690
OsAffx.17116.1.S1_at--10--6151Chr08:14195891..14195915 (25 bp)
GAGGTGGTCGATAAACCCCACCGAG
LOC_Os08g23690
OsAffx.17116.1.S1_at--541--7491Chr08:14195894..14195918 (25 bp)
GTGGTCGATAAACCCCACCGAGCTG
LOC_Os08g23690
OsAffx.17116.1.S1_at--582--5411Chr08:14195922..14195946 (25 bp)
GAAGCGGCCAAAGGGAACGAGATCT
LOC_Os08g23690
OsAffx.17116.1.S1_at--1106--2871Chr08:14195932..14195956 (25 bp)
AAGGGAACGAGATCTGGAGGTCACC
LOC_Os08g23690
OsAffx.17116.1.S1_at--476--491Chr08:14195943..14195967 (25 bp)
ATCTGGAGGTCACCACCTCTGCTTG
LOC_Os08g23690
OsAffx.17116.1.S1_at--165--4631Chr08:14195963..14195987 (25 bp)
GCTTGCCCTCTTCAAGTTCCCAGGG
LOC_Os08g23690
OsAffx.17116.1.S1_at--70--9911Chr08:14196091..14196115 (25 bp)
TACTACTGCCAAGCCATCGGATCAA
LOC_Os08g23690
Target Sequence 
GACAACCAATGAGCTAGCTCGAGACAAAGAGAGGAGAGAAAGAGAGGGGAAGGGGAAAGGACTGAGGGACGGTGGTGCTC
CTCTGCCTAGCGCGACCTTCCCTGCACCGATCTACGTGGCAGAAGAAAGAAGGAGGTGGTCGATAAACCCCACCGAGCTG
CAAGAAGCGGCCAAAGGGAACGAGATCTGGAGGTCACCACCTCTGCTTGCCCTCTTCAAGTTCCCAGGGGTGGATAAGCC
GGCACCACCCATCTCCCTCGTCTTGCTGCAGCCCCGCGCCCAACTGGTTCTACCACCTCCCAGCTCCCTCGCCTTGTTGG
CTCCCACCATCCTACTACTGCCAAGCCATCGGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis