Browse Element(s) Details


OsAffx.17357.1.S1_at

Description tigr:9636.m03650
TID=OsAffx.17357.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DNA polymerase epsilon subunit B-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g363308/11DNA polymerase epsilon subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36290OsAffx.19542.3.S1_x_at3/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290Os.36647.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290OsAffx.21754.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36300OsAffx.29554.1.S1_at11/118+22738985..22739591hypothetical protein
LOC_Os08g36310Os.5179.1.A1_at11/118+22743259..22744959Cytochrome P450 family protein, expressed
LOC_Os08g36320Os.12724.1.S1_a_at11/118+22745831..22750106Glutamate decarboxylase, putative, expressed
LOC_Os08g36330OsAffx.17357.1.S1_at8/118+22754798..22759753DNA polymerase epsilon subunit B family protein, expressed
LOC_Os08g36340Os.2358.1.S1_at11/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.45796.1.S1_at11/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.2.S1_x_at10/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40360.1.S1_at9/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.5.S1_x_at8/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.4.S1_x_at6/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40360.1.S1_x_at5/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.4.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340OsAffx.21921.1.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340OsAffx.14669.1.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36350NANA8+22783240..22783611hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0008622cellular_componentepsilon DNA polymerase complex
GO:0003893molecular_functionepsilon DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17357.1.S1_at--259--2131Chr08:22756566..22756590 (25 bp)
ACAGAGCACAAAATCACCTCAGGTT
LOC_Os08g36330
OsAffx.17357.1.S1_at--45--4271Chr08:22756596..22756620 (25 bp)
GTTGAAAACACCGTAATTTTAGCAG
LOC_Os08g36330
OsAffx.17357.1.S1_at--333--751NONE
ATGTTTGGCTTGACAGTTCTGAGAT
NONE
OsAffx.17357.1.S1_at--1085--5251Chr08:22758078..22758098 (21 bp)
GAATGATTGTAATACTTAACACCCA
LOC_Os08g36330
OsAffx.17357.1.S1_at--647--2471Chr08:22758091..22758115 (25 bp)
AACACCCAATTATTTCACCATGAGT
LOC_Os08g36330
OsAffx.17357.1.S1_at--1083--10311Chr08:22758103..22758127 (25 bp)
TTTCACCATGAGTCCACATTTTATG
LOC_Os08g36330
OsAffx.17357.1.S1_at--707--2071NONE
ACATTTTATGGTCAGCTGGTAGCAA
NONE
OsAffx.17357.1.S1_at--532--6751Chr08:22758926..22758950 (25 bp)
GTTCAGCCTATCATATGGAACTATG
LOC_Os08g36330
OsAffx.17357.1.S1_at--980--8831Chr08:22758949..22758973 (25 bp)
TGATCATTGCCTTCGGCTCTACCCT
LOC_Os08g36330
OsAffx.17357.1.S1_at--162--9911NONE
TACTCCTCACACGATAGTACTTGGT
NONE
OsAffx.17357.1.S1_at--309--2071Chr08:22759193..22759217 (25 bp)
ACTTGGTGACAAGAGCGAGCAGAAG
LOC_Os08g36330
Target Sequence 
ACAGAGCACAAAATCACCTCAGGTTTCTTCGTTGAAAACACCGTAATTTTAGCAGAAGGGGAATTGCTTTCAAATGGCAT
TTTCCAGGTAAATACATGTGGATTTCCTCCTTTAGAGGATAGGGAAGCATCACTTTCGATGCTTATGGGGCTTGATTTCT
TCGGTGGAGGTGTCATAGCAGCTGAAGAAACAGTAAGATTATCAACCTTAGAGAAGAAGGCCATGAATGATATGTTTGTG
ATACTTTCAGATGTTTGGCTTGACAGTTCTGAGATAACTAGAATGATTGTAATACTTAACACCCAATTATTTCACCATGA
GTCCACATTTTATGGTCAGCTGGTAGCAACCATCACCCATCAGAGTCATCTTTGCCCATTGCCTCTTACAGTTCAGCCTA
TCATATGGAACTATGATCATTGCCTTCGGCTCTACCCTACTCCTCACACGATAGTACTTGGTGACAAGAGCGAGCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis