Browse Element(s) Details


OsAffx.17575.1.S1_at

Description tigr:9637.m00401
TID=OsAffx.17575.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g064999/11Sulfate transporter 4.1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06464OsAffx.6185.1.S1_at11/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.3399.1.S1_at11/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.41248.2.A1_at6/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464OsAffx.23696.1.S1_x_at2/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06464Os.41248.5.S1_x_at1/119+3047031..3063462CCT motif family protein, expressed
LOC_Os09g06480OsAffx.6186.1.S1_at11/119+3066362..3068573retrotransposon, putative, centromere-specific
LOC_Os09g06480Os.54774.1.S1_at1/119+3066362..3068573retrotransposon, putative, centromere-specific
LOC_Os09g06480Os.54774.1.S1_x_at1/119+3066362..3068573retrotransposon, putative, centromere-specific
LOC_Os09g06499Os.10281.2.S1_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17576.1.S1_s_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.10281.1.S1_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17575.1.S1_x_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.10281.2.S1_x_at10/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17575.1.S1_at9/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.35889.1.S1_at1/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06520OsAffx.17577.1.S1_at11/119+3095690..3099658hypothetical protein
LOC_Os09g06520OsAffx.27864.1.S1_x_at2/119+3095690..3099658hypothetical protein
LOC_Os09g06520OsAffx.27864.5.S1_x_at1/119+3095690..3099658hypothetical protein
LOC_Os09g06530OsAffx.29733.1.S1_at11/119+3103108..3104511hypothetical protein
LOC_Os09g06540OsAffx.2022.1.S1_at1/119+3108254..3110685retrotransposon protein, putative, unclassified
LOC_Os09g06550NANA9+3113277..3114272retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17575.1.S1_at--734--5231Chr09:3076710..3076806 (25 bp)
GAATAGATCAGTGCATGTTCCAATG
LOC_Os09g06499
OsAffx.17575.1.S1_at--204--6431Chr09:3076790..3076811 (22 bp)
GATCAGTGCATGTTCCAATGTAATC
LOC_Os09g06499
OsAffx.17575.1.S1_at--400--7331Chr09:3076792..3076816 (25 bp)
GTGCATGTTCCAATGTAATCCAATT
LOC_Os09g06499
OsAffx.17575.1.S1_at--392--7071Chr09:3076806..3076937 (25 bp)
GTAATCCAATTCTTCAGTTCTCCTG
LOC_Os09g06499
OsAffx.17575.1.S1_at--359--9771Chr09:3076807..3076938 (25 bp)
TAATCCAATTCTTCAGTTCTCCTGG
LOC_Os09g06499
OsAffx.17575.1.S1_at--122--591Chr09:3076809..3076940 (25 bp)
ATCCAATTCTTCAGTTCTCCTGGCC
LOC_Os09g06499
OsAffx.17575.1.S1_at--399--5531NONE
GAAAAATCTAGAATCTGTTGGTATT
NONE
OsAffx.17575.1.S1_at--650--1751NONE
ACCCCAATAAGGAGGTGAAGACATT
NONE
OsAffx.17575.1.S1_at--16--8031Chr09:3079695..3079717 (23 bp)
GGAGGTGAAGACATTTTTCACAATT
LOC_Os09g06499
OsAffx.17575.1.S1_at--1158--10351Chr09:3079707..3079731 (25 bp)
TTTTCACAATTGATAAACTCTGTCA
LOC_Os09g06499
OsAffx.17575.1.S1_at--808--5573Chr09:3079718..3079742 (25 bp)
GATAAACTCTGTCAATTTAAACGAC
LOC_Os09g06499
Target Sequence 
GAATAGATCAGTGCATGTTCCAATGTAATCCAATTCTTCAGTTCTCCTGGCCACCATTTGTAATGGGATCAAGTTTTTTT
GTTATTCTTCTCATAATGAAAAATCTAGAATCTGTTGGTATTGCTAAAGCTTTGGCTGCGAAGAATGGCTATGAGTTGGA
CCCCAATAAGGAGGTGAAGACATTTTTCACAATTGATAAACTCTGTCAATTTAAACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis